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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
Genomic
-
NG_017158.2 RefSeqGene
- Range
-
5027..189602
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
NM_001177478.2 → NP_001170949.1 highly divergent homeobox isoform 2
Status: VALIDATED
- Description
- Transcript Variant: This variant (3) differs in the 5' UTR, lacks a portion of the 5' coding region, and initiates translation at a downstream start codon, compared to variant 1. The encoded isoform (2) has a shorter N-terminus compared to isoform 1.
- Source sequence(s)
-
AK055240, AL035552
- Consensus CDS
-
CCDS55456.1
- UniProtKB/Swiss-Prot
-
Q7Z353
- Related
- ENSP00000423670.2, ENST00000506585.6
- Conserved Domains (1) summary
-
- cd00086
Location:381 → 437
- homeodomain; Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
-
NM_001177479.2 → NP_001170950.1 highly divergent homeobox isoform 1
Status: VALIDATED
- Description
- Transcript Variant: This variant (1) represents the longest transcript and encodes the longer isoform (1). Both variants 1 and 2 encode the same isoform (1).
- Source sequence(s)
-
AL022160, AL035552, BC143522, DA719263
- Consensus CDS
-
CCDS35342.1
- UniProtKB/Swiss-Prot
- A8K1Y5, B7ZL18, Q5JZB4, Q7Z353, Q96NK7
- Related
- ENSP00000362272.2, ENST00000373177.3
- Conserved Domains (2) summary
-
- smart00389
Location:4 → 59
- HOX; Homeodomain
- cd00086
Location:439 → 495
- homeodomain; Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
-
NM_144657.5 → NP_653258.2 highly divergent homeobox isoform 1
Status: VALIDATED
- Description
- Transcript Variant: This variant (2) differs in the 5' UTR and represents use of an alternate promoter, compared to variant 1. Both variants 1 and 2 encode the same isoform (1).
- Source sequence(s)
-
AL035552, BC101720, DA719263
- Consensus CDS
-
CCDS35342.1
- UniProtKB/Swiss-Prot
- A8K1Y5, B7ZL18, Q5JZB4, Q7Z353, Q96NK7
- Related
- ENSP00000297977.5, ENST00000297977.9
- Conserved Domains (2) summary
-
- smart00389
Location:4 → 59
- HOX; Homeodomain
- cd00086
Location:439 → 495
- homeodomain; Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCh38.p14 Primary Assembly
Genomic
-
NC_000023.11 Reference GRCh38.p14 Primary Assembly
- Range
-
84317878..84502453 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_017029275.2 → XP_016884764.1 highly divergent homeobox isoform X2
- Conserved Domains (2) summary
-
- smart00389
Location:4 → 59
- HOX; Homeodomain
- cd00086
Location:421 → 477
- homeodomain; Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
-
XM_017029274.2 → XP_016884763.1 highly divergent homeobox isoform X1
- UniProtKB/Swiss-Prot
- A8K1Y5, B7ZL18, Q5JZB4, Q7Z353, Q96NK7
- Conserved Domains (2) summary
-
- smart00389
Location:4 → 59
- HOX; Homeodomain
- cd00086
Location:439 → 495
- homeodomain; Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
-
XM_047441827.1 → XP_047297783.1 highly divergent homeobox isoform X2
-
XM_011530864.2 → XP_011529166.1 highly divergent homeobox isoform X1
- UniProtKB/Swiss-Prot
- A8K1Y5, B7ZL18, Q5JZB4, Q7Z353, Q96NK7
- Conserved Domains (2) summary
-
- smart00389
Location:4 → 59
- HOX; Homeodomain
- cd00086
Location:439 → 495
- homeodomain; Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
-
XM_047441828.1 → XP_047297784.1 highly divergent homeobox isoform X2
-
XM_011530863.3 → XP_011529165.1 highly divergent homeobox isoform X1
- UniProtKB/Swiss-Prot
- A8K1Y5, B7ZL18, Q5JZB4, Q7Z353, Q96NK7
- Conserved Domains (2) summary
-
- smart00389
Location:4 → 59
- HOX; Homeodomain
- cd00086
Location:439 → 495
- homeodomain; Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
-
XM_047441829.1 → XP_047297785.1 highly divergent homeobox isoform X3
RNA
-
XR_001755653.2 RNA Sequence
-
XR_001755652.2 RNA Sequence
-
XR_938392.2 RNA Sequence
Alternate T2T-CHM13v2.0
Genomic
-
NC_060947.1 Alternate T2T-CHM13v2.0
- Range
-
82754225..82938810 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_054326473.1 → XP_054182448.1 highly divergent homeobox isoform X1
- UniProtKB/Swiss-Prot
- A8K1Y5, B7ZL18, Q5JZB4, Q7Z353, Q96NK7
-
XM_054326474.1 → XP_054182449.1 highly divergent homeobox isoform X1
- UniProtKB/Swiss-Prot
- A8K1Y5, B7ZL18, Q5JZB4, Q7Z353, Q96NK7
-
XM_054326475.1 → XP_054182450.1 highly divergent homeobox isoform X2
-
XM_054326476.1 → XP_054182451.1 highly divergent homeobox isoform X2
-
XM_054326477.1 → XP_054182452.1 highly divergent homeobox isoform X2
-
XM_054326472.1 → XP_054182447.1 highly divergent homeobox isoform X1
- UniProtKB/Swiss-Prot
- A8K1Y5, B7ZL18, Q5JZB4, Q7Z353, Q96NK7
-
XM_054326478.1 → XP_054182453.1 highly divergent homeobox isoform X3
RNA
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XR_008485453.1 RNA Sequence
-
XR_008485451.1 RNA Sequence
-
XR_008485452.1 RNA Sequence