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    FSTL1 follistatin like 1 [ Sus scrofa (pig) ]

    Gene ID: 110256417, updated on 17-Aug-2024

    Summary

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    Official Symbol
    FSTL1provided by VGNC
    Official Full Name
    follistatin like 1provided by VGNC
    Primary source
    VGNC:VGNC:88255
    See related
    Ensembl:ENSSSCG00000039426
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Sus scrofa
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
    Expression
    Ubiquitous expression in subcutaneous adipose (RPKM 211.0), lung (RPKM 165.6) and 8 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See FSTL1 in Genome Data Viewer
    Location:
    chromosome: 13
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    106 current Sscrofa11.1 (GCF_000003025.6) 13 NC_010455.5 (139847246..139901972)

    Chromosome 13 - NC_010455.5Genomic Context describing neighboring genes Neighboring gene homogentisate 1,2-dioxygenase Neighboring gene uncharacterized LOC102162379 Neighboring gene NADH:ubiquinone oxidoreductase subunit B4 Neighboring gene uncharacterized LOC110256418 Neighboring gene leucine rich repeat containing 58 Neighboring gene voltage-dependent anion-selective channel protein 2 pseudogene Neighboring gene G protein-coupled receptor 156

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_010455.5 Chromosome 13 Reference Sscrofa11.1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
    • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
    • BioProject: PRJNA311523
    • Publication: PMID 27646534
    • Analysis date: Thu Dec 14 17:10:49 2017

    Bibliography

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    Related articles in PubMed

    1. PEDE (Pig EST Data Explorer) has been expanded into Pig Expression Data Explorer, including 10 147 porcine full-length cDNA sequences. Uenishi H, et al. Nucleic Acids Res, 2007 Jan. PMID 17145712, Free PMC Article
    2. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables calcium ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cell differentiation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in multicellular organism development IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of BMP signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in extracellular space IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    follistatin-related protein 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Sscrofa11.1 Primary Assembly

    Genomic

    1. NC_010455.5 Reference Sscrofa11.1 Primary Assembly

      Range
      139847246..139901972
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021070306.1 → XP_020925965.1  follistatin-related protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A287BP22, A0A4X1UVD9, A0A4X1UZF0, A0A8D0JST4, A0A8D1ATX0, U3GT97
      Related
      ENSSSCP00000058261.1, ENSSSCT00000057721.2
      Conserved Domains (4) summary
      smart00274
      Location:30 → 52
      FOLN; Follistatin-N-terminal domain-like
      smart00280
      Location:53 → 97
      KAZAL; Kazal type serine protease inhibitors
      cd16233
      Location:112 → 225
      EFh_SPARC_FSTL1; EF-hand, extracellular calcium-binding (EC) motif, found in follistatin-related protein 1 (FRP-1)
      cl17735
      Location:232 → 270
      VWC; von Willebrand factor type C domain

    2. XM_021070307.1 → XP_020925966.1  follistatin-related protein 1 isoform X2

      UniProtKB/TrEMBL
      A0A8D0TZX2, A0A8W4FEH9
      Conserved Domains (3) summary
      smart00274
      Location:30 → 52
      FOLN; Follistatin-N-terminal domain-like
      smart00280
      Location:53 → 97
      KAZAL; Kazal type serine protease inhibitors
      cd16233
      Location:112 → 225
      EFh_SPARC_FSTL1; EF-hand, extracellular calcium-binding (EC) motif, found in follistatin-related protein 1 (FRP-1)
    Nucleotide Protein
    Heading Accession and Version

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