NEW
Try the new Transcript table
These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
mRNA and Protein(s)
-
NM_001242396.1 → NP_001229325.1 probable JmjC domain-containing histone demethylation protein 2C isoform 2
See identical proteins and their annotated locations for NP_001229325.1
Status: VALIDATED
- Description
- Transcript Variant: This variant (2) differs in the 5' UTR and coding sequence compared to variant 1. The resulting isoform (2) is shorter at the N-terminus and lacks a single internal aa compared to isoform 1.
- Source sequence(s)
-
AC155712, AC156272, AK082106, AK085500, BC054559, BP761712, CD578529
- Consensus CDS
-
CCDS56708.1
- UniProtKB/Swiss-Prot
- E9QMM8, Q69ZK6, Q6NV48, Q8BUF5, Q8C4I5, Q8C5Q9
- Related
- ENSMUSP00000133700.2, ENSMUST00000173689.8
- Conserved Domains (3) summary
-
- smart00558
Location:2106 → 2160
- JmjC; A domain family that is part of the cupin metalloenzyme superfamily
- pfam11725
Location:885 → 1079
- AvrE; Pathogenicity factor
- cl40423
Location:2192 → 2291
- cupin_RmlC-like; RmlC-like cupin superfamily
-
NM_207221.3 → NP_997104.2 probable JmjC domain-containing histone demethylation protein 2C isoform 1
Status: VALIDATED
- Description
- Transcript Variant: This variant (1) encodes the longer isoform (1).
- Source sequence(s)
-
AC155712, AC156272
- Consensus CDS
-
CCDS56707.1
- UniProtKB/TrEMBL
-
A0A0A0MQ98
- Related
- ENSMUSP00000056227.10, ENSMUST00000051446.16
- Conserved Domains (2) summary
-
- smart00558
Location:2286 → 2340
- JmjC; A domain family that is part of the cupin metalloenzyme superfamily
- cl21464
Location:2372 → 2471
- cupin_like; Conserved domain found in cupin and related proteins
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCm39 C57BL/6J
Genomic
-
NC_000076.7 Reference GRCm39 C57BL/6J
- Range
-
66932189..67092105
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_036155486.1 → XP_036011379.1 probable JmjC domain-containing histone demethylation protein 2C isoform X4
- UniProtKB/Swiss-Prot
- E9QMM8, Q69ZK6, Q6NV48, Q8BUF5, Q8C4I5, Q8C5Q9
- Conserved Domains (3) summary
-
- smart00558
Location:2106 → 2160
- JmjC; A domain family that is part of the cupin metalloenzyme superfamily
- pfam11725
Location:885 → 1079
- AvrE; Pathogenicity factor
- cl40423
Location:2192 → 2291
- cupin_RmlC-like; RmlC-like cupin superfamily
-
XM_036155494.1 → XP_036011387.1 probable JmjC domain-containing histone demethylation protein 2C isoform X7
- Conserved Domains (3) summary
-
- smart00558
Location:2000 → 2054
- JmjC; A domain family that is part of the cupin metalloenzyme superfamily
- pfam11725
Location:779 → 973
- AvrE; Pathogenicity factor
- cl40423
Location:2086 → 2185
- cupin_RmlC-like; RmlC-like cupin superfamily
-
XM_036155489.1 → XP_036011382.1 probable JmjC domain-containing histone demethylation protein 2C isoform X5
- Conserved Domains (3) summary
-
- smart00558
Location:2052 → 2106
- JmjC; A domain family that is part of the cupin metalloenzyme superfamily
- pfam11725
Location:831 → 1025
- AvrE; Pathogenicity factor
- cl40423
Location:2138 → 2237
- cupin_RmlC-like; RmlC-like cupin superfamily
-
XM_036155492.1 → XP_036011385.1 probable JmjC domain-containing histone demethylation protein 2C isoform X6
- Conserved Domains (3) summary
-
- smart00558
Location:2038 → 2092
- JmjC; A domain family that is part of the cupin metalloenzyme superfamily
- pfam11725
Location:817 → 1011
- AvrE; Pathogenicity factor
- cl40423
Location:2124 → 2223
- cupin_RmlC-like; RmlC-like cupin superfamily
-
XM_036155487.1 → XP_036011380.1 probable JmjC domain-containing histone demethylation protein 2C isoform X4
- UniProtKB/Swiss-Prot
- E9QMM8, Q69ZK6, Q6NV48, Q8BUF5, Q8C4I5, Q8C5Q9
- Conserved Domains (3) summary
-
- smart00558
Location:2106 → 2160
- JmjC; A domain family that is part of the cupin metalloenzyme superfamily
- pfam11725
Location:885 → 1079
- AvrE; Pathogenicity factor
- cl40423
Location:2192 → 2291
- cupin_RmlC-like; RmlC-like cupin superfamily
-
XM_036155490.1 → XP_036011383.1 probable JmjC domain-containing histone demethylation protein 2C isoform X5
- Conserved Domains (3) summary
-
- smart00558
Location:2052 → 2106
- JmjC; A domain family that is part of the cupin metalloenzyme superfamily
- pfam11725
Location:831 → 1025
- AvrE; Pathogenicity factor
- cl40423
Location:2138 → 2237
- cupin_RmlC-like; RmlC-like cupin superfamily
-
XM_036155493.1 → XP_036011386.1 probable JmjC domain-containing histone demethylation protein 2C isoform X6
- Conserved Domains (3) summary
-
- smart00558
Location:2038 → 2092
- JmjC; A domain family that is part of the cupin metalloenzyme superfamily
- pfam11725
Location:817 → 1011
- AvrE; Pathogenicity factor
- cl40423
Location:2124 → 2223
- cupin_RmlC-like; RmlC-like cupin superfamily
-
XM_030244805.2 → XP_030100665.1 probable JmjC domain-containing histone demethylation protein 2C isoform X4
- UniProtKB/Swiss-Prot
- E9QMM8, Q69ZK6, Q6NV48, Q8BUF5, Q8C4I5, Q8C5Q9
- Conserved Domains (3) summary
-
- smart00558
Location:2106 → 2160
- JmjC; A domain family that is part of the cupin metalloenzyme superfamily
- pfam11725
Location:885 → 1079
- AvrE; Pathogenicity factor
- cl40423
Location:2192 → 2291
- cupin_RmlC-like; RmlC-like cupin superfamily
-
XM_030244817.2 → XP_030100677.1 probable JmjC domain-containing histone demethylation protein 2C isoform X7
- Conserved Domains (3) summary
-
- smart00558
Location:2000 → 2054
- JmjC; A domain family that is part of the cupin metalloenzyme superfamily
- pfam11725
Location:779 → 973
- AvrE; Pathogenicity factor
- cl40423
Location:2086 → 2185
- cupin_RmlC-like; RmlC-like cupin superfamily
-
XM_030244810.2 → XP_030100670.1 probable JmjC domain-containing histone demethylation protein 2C isoform X5
- Conserved Domains (3) summary
-
- smart00558
Location:2052 → 2106
- JmjC; A domain family that is part of the cupin metalloenzyme superfamily
- pfam11725
Location:831 → 1025
- AvrE; Pathogenicity factor
- cl40423
Location:2138 → 2237
- cupin_RmlC-like; RmlC-like cupin superfamily
-
XM_030244814.2 → XP_030100674.1 probable JmjC domain-containing histone demethylation protein 2C isoform X6
- Conserved Domains (3) summary
-
- smart00558
Location:2038 → 2092
- JmjC; A domain family that is part of the cupin metalloenzyme superfamily
- pfam11725
Location:817 → 1011
- AvrE; Pathogenicity factor
- cl40423
Location:2124 → 2223
- cupin_RmlC-like; RmlC-like cupin superfamily
-
XM_006513042.5 → XP_006513105.1 probable JmjC domain-containing histone demethylation protein 2C isoform X4
See identical proteins and their annotated locations for XP_006513105.1
- UniProtKB/Swiss-Prot
- E9QMM8, Q69ZK6, Q6NV48, Q8BUF5, Q8C4I5, Q8C5Q9
- Conserved Domains (3) summary
-
- smart00558
Location:2106 → 2160
- JmjC; A domain family that is part of the cupin metalloenzyme superfamily
- pfam11725
Location:885 → 1079
- AvrE; Pathogenicity factor
- cl40423
Location:2192 → 2291
- cupin_RmlC-like; RmlC-like cupin superfamily
-
XM_006513044.5 → XP_006513107.1 probable JmjC domain-containing histone demethylation protein 2C isoform X7
- Conserved Domains (3) summary
-
- smart00558
Location:2000 → 2054
- JmjC; A domain family that is part of the cupin metalloenzyme superfamily
- pfam11725
Location:779 → 973
- AvrE; Pathogenicity factor
- cl40423
Location:2086 → 2185
- cupin_RmlC-like; RmlC-like cupin superfamily
-
XM_030244807.2 → XP_030100667.1 probable JmjC domain-containing histone demethylation protein 2C isoform X5
- Conserved Domains (3) summary
-
- smart00558
Location:2052 → 2106
- JmjC; A domain family that is part of the cupin metalloenzyme superfamily
- pfam11725
Location:831 → 1025
- AvrE; Pathogenicity factor
- cl40423
Location:2138 → 2237
- cupin_RmlC-like; RmlC-like cupin superfamily
-
XM_030244812.2 → XP_030100672.1 probable JmjC domain-containing histone demethylation protein 2C isoform X6
- Conserved Domains (3) summary
-
- smart00558
Location:2038 → 2092
- JmjC; A domain family that is part of the cupin metalloenzyme superfamily
- pfam11725
Location:817 → 1011
- AvrE; Pathogenicity factor
- cl40423
Location:2124 → 2223
- cupin_RmlC-like; RmlC-like cupin superfamily
-
XM_006513041.4 → XP_006513104.1 probable JmjC domain-containing histone demethylation protein 2C isoform X4
See identical proteins and their annotated locations for XP_006513104.1
- UniProtKB/Swiss-Prot
- E9QMM8, Q69ZK6, Q6NV48, Q8BUF5, Q8C4I5, Q8C5Q9
- Conserved Domains (3) summary
-
- smart00558
Location:2106 → 2160
- JmjC; A domain family that is part of the cupin metalloenzyme superfamily
- pfam11725
Location:885 → 1079
- AvrE; Pathogenicity factor
- cl40423
Location:2192 → 2291
- cupin_RmlC-like; RmlC-like cupin superfamily
-
XM_036155491.1 → XP_036011384.1 probable JmjC domain-containing histone demethylation protein 2C isoform X5
- Conserved Domains (3) summary
-
- smart00558
Location:2052 → 2106
- JmjC; A domain family that is part of the cupin metalloenzyme superfamily
- pfam11725
Location:831 → 1025
- AvrE; Pathogenicity factor
- cl40423
Location:2138 → 2237
- cupin_RmlC-like; RmlC-like cupin superfamily
-
XM_036155488.1 → XP_036011381.1 probable JmjC domain-containing histone demethylation protein 2C isoform X4
- UniProtKB/Swiss-Prot
- E9QMM8, Q69ZK6, Q6NV48, Q8BUF5, Q8C4I5, Q8C5Q9
- Conserved Domains (3) summary
-
- smart00558
Location:2106 → 2160
- JmjC; A domain family that is part of the cupin metalloenzyme superfamily
- pfam11725
Location:885 → 1079
- AvrE; Pathogenicity factor
- cl40423
Location:2192 → 2291
- cupin_RmlC-like; RmlC-like cupin superfamily
-
XM_006513035.4 → XP_006513098.1 probable JmjC domain-containing histone demethylation protein 2C isoform X1
- UniProtKB/TrEMBL
-
G3UZM1
- Related
- ENSMUSP00000134551.2, ENSMUST00000174408.8
- Conserved Domains (3) summary
-
- smart00558
Location:2287 → 2341
- JmjC; A domain family that is part of the cupin metalloenzyme superfamily
- pfam11725
Location:1066 → 1260
- AvrE; Pathogenicity factor
- cl21464
Location:2373 → 2472
- cupin_like; Conserved domain found in cupin and related proteins
-
XM_006513040.4 → XP_006513103.1 probable JmjC domain-containing histone demethylation protein 2C isoform X3
- Conserved Domains (3) summary
-
- smart00558
Location:2219 → 2273
- JmjC; A domain family that is part of the cupin metalloenzyme superfamily
- pfam11725
Location:998 → 1192
- AvrE; Pathogenicity factor
- cl21464
Location:2305 → 2404
- cupin_like; Conserved domain found in cupin and related proteins
-
XM_006513037.4 → XP_006513100.1 probable JmjC domain-containing histone demethylation protein 2C isoform X2
- Conserved Domains (3) summary
-
- smart00558
Location:2249 → 2303
- JmjC; A domain family that is part of the cupin metalloenzyme superfamily
- pfam11725
Location:1028 → 1222
- AvrE; Pathogenicity factor
- cl21464
Location:2335 → 2434
- cupin_like; Conserved domain found in cupin and related proteins
-
XM_030244811.1 → XP_030100671.1 probable JmjC domain-containing histone demethylation protein 2C isoform X5
- Conserved Domains (3) summary
-
- smart00558
Location:2052 → 2106
- JmjC; A domain family that is part of the cupin metalloenzyme superfamily
- pfam11725
Location:831 → 1025
- AvrE; Pathogenicity factor
- cl40423
Location:2138 → 2237
- cupin_RmlC-like; RmlC-like cupin superfamily
-
XM_036155495.1 → XP_036011388.1 probable JmjC domain-containing histone demethylation protein 2C isoform X7
- Conserved Domains (3) summary
-
- smart00558
Location:2000 → 2054
- JmjC; A domain family that is part of the cupin metalloenzyme superfamily
- pfam11725
Location:779 → 973
- AvrE; Pathogenicity factor
- cl40423
Location:2086 → 2185
- cupin_RmlC-like; RmlC-like cupin superfamily
RNA
-
XR_001779409.2 RNA Sequence
-
XR_001779410.2 RNA Sequence
-
XR_001779408.2 RNA Sequence
-
XR_004936032.1 RNA Sequence