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    SOX4 SRY-box transcription factor 4 [ Capra hircus (goat) ]

    Gene ID: 108633488, updated on 1-Aug-2024

    Summary

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    Gene symbol
    SOX4
    Gene description
    SRY-box transcription factor 4
    See related
    EnsemblRapid:ENSCHIG00000013419
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Capra hircus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Caprinae; Capra
    Orthologs
    human mouse all
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    Genomic context

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    See SOX4 in Genome Data Viewer
    Location:
    chromosome: 23
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    102 current ASM170441v1 (GCF_001704415.1) 23 NC_030830.1 (13838195..13843498)

    Chromosome 23 - NC_030830.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC106503516 Neighboring gene uncharacterized LOC106503513 Neighboring gene 40S ribosomal protein S4, X isoform Neighboring gene placental prolactin-related protein 4-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_030830.1 Chromosome 23 Reference ASM170441v1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription activator activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in anatomical structure morphogenesis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in cell differentiation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    transcription factor SOX-4
    Names
    SRY-box 4

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Capra hircus Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM170441v1 Primary Assembly

    Genomic

    1. NC_030830.1 Reference ASM170441v1 Primary Assembly

      Range
      13838195..13843498
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_018039041.1 → XP_017894530.1  transcription factor SOX-4 isoform X1

      UniProtKB/TrEMBL
      A0A452EGH4, A0AAJ7JJ33

    2. XM_018039042.1 → XP_017894531.1  transcription factor SOX-4 isoform X2

      UniProtKB/TrEMBL
      A0A452EGG9, A0A452EGH4
      Related
      ENSCHIP00000011145.2, ENSCHIT00000018931.2

    3. XM_018039043.1 → XP_017894532.1  transcription factor SOX-4 isoform X3

      UniProtKB/TrEMBL
      A0A452EGJ5, A0AAJ7JKI4
    Nucleotide Protein
    Heading Accession and Version

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