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    OGN osteoglycin [ Sus scrofa (pig) ]

    Gene ID: 106509723, updated on 17-Aug-2024

    Summary

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    Official Symbol
    OGNprovided by VGNC
    Official Full Name
    osteoglycinprovided by VGNC
    Primary source
    VGNC:VGNC:91028
    See related
    Ensembl:ENSSSCG00000034607
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Sus scrofa
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
    Expression
    Broad expression in subcutaneous adipose (RPKM 93.4), lung (RPKM 60.4) and 7 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See OGN in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    106 current Sscrofa11.1 (GCF_000003025.6) 3 NC_010445.4 (42116521..42135940, complement)
    105 previous assembly Sscrofa10.2 (GCF_000003025.5) 3 NC_010445.3 (43250528..43259180)

    Chromosome 3 - NC_010445.4Genomic Context describing neighboring genes Neighboring gene isoleucyl-tRNA synthetase 1 Neighboring gene nucleolar protein 8 Neighboring gene centromere protein P Neighboring gene osteomodulin Neighboring gene asporin

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
    • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
    • BioProject: PRJNA311523
    • Publication: PMID 27646534
    • Analysis date: Thu Dec 14 17:10:49 2017

    Bibliography

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    Related articles in PubMed

    1. Small leucine-rich repeat proteoglycans associated with mature insoluble elastin serve as binding sites for galectins. Itoh A, et al. Biosci Biotechnol Biochem, 2017 Nov. PMID 28958189
    2. Porcine OGN and ASPN: mapping, polymorphisms and use for quantitative trait loci identification for growth and carcass traits in a Meishan x Piétrain intercross. Stratil A, et al. Anim Genet, 2006 Aug. PMID 16879361
    3. Comparative analysis of protein coding sequences from human, mouse and the domesticated pig. Jørgensen FG, et al. BMC Biol, 2005 Jan 28. PMID 15679890, Free PMC Article
    4. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Mapping of the OGN and ASPN genes and association with growth and carcass traits.
      Title: Porcine OGN and ASPN: mapping, polymorphisms and use for quantitative trait loci identification for growth and carcass traits in a Meishan x Piétrain intercross.
    Submit: New GeneRIF Correction

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    mimecan
    Names
    osteoglycin/mimecan

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001315728.1 → NP_001302657.1  mimecan precursor

      Status: PROVISIONAL

      Source sequence(s)
      LC060063
      UniProtKB/TrEMBL
      A0A0H5ANC0, A0A4X1TYW8, A0A8D0X3E2
      Conserved Domains (2) summary
      sd00033
      Location:123 → 144
      LRR_RI; leucine-rich repeat [structural motif]
      pfam13855
      Location:143 → 225
      LRR_8; Leucine rich repeat

    RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Sscrofa11.1 Primary Assembly

    Genomic

    1. NC_010445.4 Reference Sscrofa11.1 Primary Assembly

      Range
      42116521..42135940 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_013995780.2 → XP_013851234.1  mimecan isoform X1

      UniProtKB/TrEMBL
      A0A0H5ANC0, A0A4X1TYW8, A0A8D0X3E2
      Related
      ENSSSCP00000045106.1, ENSSSCT00000038459.3
      Conserved Domains (2) summary
      sd00033
      Location:123 → 144
      LRR_RI; leucine-rich repeat [structural motif]
      pfam13855
      Location:143 → 225
      LRR_8; Leucine rich repeat

    2. XM_021085818.1 → XP_020941477.1  mimecan isoform X1

      UniProtKB/TrEMBL
      A0A0H5ANC0, A0A4X1TYW8, A0A8D0X3E2
      Conserved Domains (2) summary
      sd00033
      Location:123 → 144
      LRR_RI; leucine-rich repeat [structural motif]
      pfam13855
      Location:143 → 225
      LRR_8; Leucine rich repeat
    Nucleotide Protein
    Heading Accession and Version

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