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    S100A1 S100 calcium binding protein A1 [ Sus scrofa (pig) ]

    Gene ID: 106504218, updated on 17-Aug-2024

    Summary

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    Official Symbol
    S100A1provided by VGNC
    Official Full Name
    S100 calcium binding protein A1provided by VGNC
    Primary source
    VGNC:VGNC:92535
    See related
    Ensembl:ENSSSCG00000031053
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Sus scrofa
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
    Expression
    Broad expression in subcutaneous adipose (RPKM 203.3), ovary (RPKM 113.2) and 6 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See S100A1 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    106 current Sscrofa11.1 (GCF_000003025.6) 4 NC_010446.5 (96007026..96012305, complement)
    105 previous assembly Sscrofa10.2 (GCF_000003025.5) 4 NC_010446.4 (104900208..104900536, complement)

    Chromosome 4 - NC_010446.5Genomic Context describing neighboring genes Neighboring gene interleukin enhancer binding factor 2 Neighboring gene SNAP associated protein Neighboring gene chromatin target of PRMT1 Neighboring gene S100 calcium binding protein A13 Neighboring gene S100 calcium binding protein A14 Neighboring gene S100 calcium binding protein A16

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
    • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
    • BioProject: PRJNA311523
    • Publication: PMID 27646534
    • Analysis date: Thu Dec 14 17:10:49 2017

    Bibliography

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    Related articles in PubMed

    1. PEDE (Pig EST Data Explorer) has been expanded into Pig Expression Data Explorer, including 10 147 porcine full-length cDNA sequences. Uenishi H, et al. Nucleic Acids Res, 2007 Jan. PMID 17145712, Free PMC Article
    2. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables S100 protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables calcium ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of heart contraction IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in sarcoplasmic reticulum IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein S100-A1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Sscrofa11.1 Primary Assembly

    Genomic

    1. NC_010446.5 Reference Sscrofa11.1 Primary Assembly

      Range
      96007026..96012305 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021089807.1 → XP_020945466.1  protein S100-A1 isoform X1

      UniProtKB/TrEMBL
      A0A480IUI2, A0A8D0IN26, A0A8D1BE24, A0A8D1J0S1, K7GQ50
      Related
      ENSSSCP00000030017.3, ENSSSCT00000035788.4
      Conserved Domains (1) summary
      cd05025
      Location:89 → 180
      S-100A1; S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this ...

    2. XM_021089808.1 → XP_020945467.1  protein S100-A1 isoform X2

      UniProtKB/TrEMBL
      A0A8D1JTE5
      Conserved Domains (1) summary
      cd05025
      Location:2 → 93
      S-100A1; S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this ...
    Nucleotide Protein
    Heading Accession and Version

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