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    LOC105372068 uncharacterized LOC105372068 [ Homo sapiens (human) ]

    Gene ID: 105372068, updated on 17-Sep-2024

    Summary

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    Gene symbol
    LOC105372068
    Gene description
    uncharacterized LOC105372068
    See related
    Ensembl:ENSG00000267202
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    See LOC105372068 in Genome Data Viewer
    Location:
    18q12.2
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 18 NC_000018.10 (37274460..37276400)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 18 NC_060942.1 (37467526..37469466)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 18 NC_000018.9 (34854423..34856363)

    Chromosome 18 - NC_000018.10Genomic Context describing neighboring genes Neighboring gene KIAA1328 Neighboring gene uncharacterized LOC105372069 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr18:34527890-34528524 Neighboring gene uncharacterized LOC124904287 Neighboring gene VISTA enhancer hs590 Neighboring gene H3K27ac hESC enhancer GRCh37_chr18:34745369-34745869 Neighboring gene Sharpr-MPRA regulatory region 1146 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr18:34797958-34798476 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr18:34798477-34798995 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr18:34829500-34830000 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr18:34830001-34830501 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 9407 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr18:34885971-34886552 Neighboring gene CUGBP Elav-like family member 4 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr18:34902991-34903527 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr18:34921466-34922026 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr18:34942069-34943065 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr18:34948255-34949075 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr18:34953503-34954289 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr18:34952714-34953502 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr18:34983317-34984180 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr18:35001359-35001962 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr18:35009620-35010464 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr18:35031250-35032144 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr18:35044533-35045032 Neighboring gene VISTA enhancer hs371 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr18:35068641-35069538 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr18:35069539-35070435 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr18:35079487-35079986 Neighboring gene small nucleolar RNA, H/ACA box 111 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr18:35113712-35114212 Neighboring gene Sharpr-MPRA regulatory region 9247 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr18:35134039-35134804 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr18:35145305-35145808 Neighboring gene uncharacterized LOC124904288

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    Genotypes

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_134588.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC090386, AI200809
      Related
      ENST00000586610.1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000018.10 Reference GRCh38.p14 Primary Assembly

      Range
      37274460..37276400
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060942.1 Alternate T2T-CHM13v2.0

      Range
      37467526..37469466
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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    Research Materials