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    FOXA1 forkhead box A1 [ Capra hircus (goat) ]

    Gene ID: 102171659, updated on 10-Mar-2024

    Summary

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    Gene symbol
    FOXA1
    Gene description
    forkhead box A1
    See related
    EnsemblRapid:ENSCHIG00000023519
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Capra hircus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Caprinae; Capra
    Orthologs
    human mouse all
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    Genomic context

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    See FOXA1 in Genome Data Viewer
    Location:
    chromosome: 21
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    102 current ASM170441v1 (GCF_001704415.1) 21 NC_030828.1 (47183330..47190045, complement)
    101 previous assembly CHIR_1.0 (GCF_000317765.1) 21 NC_022313.1 (45293426..45294992, complement)

    Chromosome 21 - NC_030828.1Genomic Context describing neighboring genes Neighboring gene solute carrier family 25 member 21 Neighboring gene histone-lysine N-methyltransferase SETMAR-like Neighboring gene serine/threonine-protein phosphatase PP1-gamma catalytic subunit pseudogene Neighboring gene mirror-image polydactyly 1 Neighboring gene uncharacterized LOC106503369 Neighboring gene tetratricopeptide repeat domain 6

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein domain specific binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables transcription factor binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in anatomical structure morphogenesis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in cell differentiation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    hepatocyte nuclear factor 3-alpha

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Capra hircus Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM170441v1 Primary Assembly

    Genomic

    1. NC_030828.1 Reference ASM170441v1 Primary Assembly

      Range
      47183330..47190045 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_018066512.1 → XP_017922001.1  hepatocyte nuclear factor 3-alpha

      UniProtKB/TrEMBL
      A0A452FTW6, A0A8C2P620
      Related
      ENSCHIP00000027706.1, ENSCHIT00000035574.2
      Conserved Domains (3) summary
      pfam08430
      Location:17 → 169
      Forkhead_N; Forkhead N-terminal region
      pfam09354
      Location:394 → 457
      HNF_C; HNF3 C-terminal domain
      cd20038
      Location:157 → 268
      FH_FOXA1; Forkhead (FH) domain found in Forkhead box protein A1 (FOXA1) and similar proteins
    Nucleotide Protein
    Heading Accession and Version

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