U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    NCAPD2 non-SMC condensin I complex subunit D2 [ Sus scrofa (pig) ]

    Gene ID: 102164405, updated on 17-Aug-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    NCAPD2provided by VGNC
    Official Full Name
    non-SMC condensin I complex subunit D2provided by VGNC
    Primary source
    VGNC:VGNC:90597
    See related
    Ensembl:ENSSSCG00000000693
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Sus scrofa
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
    Expression
    Ubiquitous expression in spleen (RPKM 9.5), lung (RPKM 6.3) and 8 other tissues See more
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See NCAPD2 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    32
    Annotation release Status Assembly Chr Location
    106 current Sscrofa11.1 (GCF_000003025.6) 5 NC_010447.5 (64136505..64167410, complement)
    105 previous assembly Sscrofa10.2 (GCF_000003025.5) 5 NC_010447.4 (66432917..66443817)

    Chromosome 5 - NC_010447.5Genomic Context describing neighboring genes Neighboring gene NOP2 nucleolar protein Neighboring gene intermediate filament family orphan 1 Neighboring gene uncharacterized LOC110260753 Neighboring gene glyceraldehyde-3-phosphate dehydrogenase Neighboring gene mitochondrial ribosomal protein L51 Neighboring gene vesicle associated membrane protein 1 Neighboring gene TAP binding protein like

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
    • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
    • BioProject: PRJNA311523
    • Publication: PMID 27646534
    • Analysis date: Thu Dec 14 17:10:49 2017

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables histone binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in meiotic chromosome condensation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in mitotic cell cycle IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in mitotic chromosome condensation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in condensed chromosome, centromeric region IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    condensin complex subunit 1

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Sscrofa11.1 Primary Assembly

    Genomic

    1. NC_010447.5 Reference Sscrofa11.1 Primary Assembly

      Range
      64136505..64167410 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021092430.1 → XP_020948089.1  condensin complex subunit 1 isoform X1

      UniProtKB/TrEMBL
      A0A8D0Q036, F1SLS9
      Related
      ENSSSCP00000000739.3, ENSSSCT00000000755.3
      Conserved Domains (1) summary
      cl26274
      Location:79 → 1241
      Cnd1_N; non-SMC mitotic condensation complex subunit 1, N-term

    2. XM_021092431.1 → XP_020948090.1  condensin complex subunit 1 isoform X2

      UniProtKB/TrEMBL
      A0A8D0Q036
      Related
      ENSSSCP00000067609.1, ENSSSCT00000079331.1
      Conserved Domains (1) summary
      cl26274
      Location:79 → 1234
      Cnd1_N; non-SMC mitotic condensation complex subunit 1, N-term

    3. XM_021092429.1 → XP_020948088.1  condensin complex subunit 1 isoform X1

      UniProtKB/TrEMBL
      A0A8D0Q036, F1SLS9
      Conserved Domains (1) summary
      cl26274
      Location:79 → 1241
      Cnd1_N; non-SMC mitotic condensation complex subunit 1, N-term
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials