U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    PDLIM2 PDZ and LIM domain 2 [ Macaca fascicularis (crab-eating macaque) ]

    Gene ID: 102126589, updated on 10-Oct-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    PDLIM2
    Gene description
    PDZ and LIM domain 2
    See related
    Ensembl:ENSMFAG00000032463
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca fascicularis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See PDLIM2 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2024_05 current T2T-MFA8v1.0 (GCF_037993035.1) 8 NC_088382.1 (25670759..25686921)
    102 previous assembly MFA1912RKSv2 (GCF_012559485.2) 8 NC_052262.1 (21299287..21315442)

    Chromosome 8 - NC_088382.1Genomic Context describing neighboring genes Neighboring gene protein phosphatase 3 catalytic subunit gamma Neighboring gene transcription factor BTF3-like Neighboring gene sorbin and SH3 domain containing 3 Neighboring gene chromosome 8 C8orf58 homolog Neighboring gene cell cycle and apoptosis regulator 2 Neighboring gene bridging integrator 3

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables actin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables muscle alpha-actinin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in actin cytoskeleton organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in heart development IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in muscle structure development IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in Z disc IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in adherens junction IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of filamentous actin IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in stress fiber IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    PDZ and LIM domain protein 2

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: GCF_037993035.1-RS_2024_05

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference T2T-MFA8v1.0

    Genomic

    1. NC_088382.1 Reference T2T-MFA8v1.0

      Range
      25670759..25686921
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005562809.4 → XP_005562866.3  PDZ and LIM domain protein 2 isoform X1

    2. XM_015454572.3 → XP_015310058.3  PDZ and LIM domain protein 2 isoform X2

    3. XM_065518983.1 → XP_065375055.1  PDZ and LIM domain protein 2 isoform X4

    4. XM_015454573.3 → XP_015310059.3  PDZ and LIM domain protein 2 isoform X3

    5. XM_045398028.2 → XP_045253963.1  PDZ and LIM domain protein 2 isoform X5

      Conserved Domains (3) summary
      cd09449
      Location:286 → 338
      LIM_Mystique; The LIM domain of Mystique, a subfamily of ALP LIM domain proteins
      cd00992
      Location:9 → 80
      PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
      pfam15936
      Location:202 → 255
      DUF4749; Domain of unknown function (DUF4749)

    6. XM_015454574.3 → XP_015310060.1  PDZ and LIM domain protein 2 isoform X5

      UniProtKB/Swiss-Prot
      Q9GKU1
      UniProtKB/TrEMBL
      A0A2K5V2E5
      Related
      ENSMFAP00000018913.1
      Conserved Domains (3) summary
      cd09449
      Location:286 → 338
      LIM_Mystique; The LIM domain of Mystique, a subfamily of ALP LIM domain proteins
      cd00992
      Location:9 → 80
      PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
      pfam15936
      Location:202 → 255
      DUF4749; Domain of unknown function (DUF4749)

    7. XM_065518984.1 → XP_065375056.1  PDZ and LIM domain protein 2 isoform X5

    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9GKU1.1 GenPept UniProtKB/Swiss-Prot:Q9GKU1

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.