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    LOC101747587 polyubiquitin-C-like [ Gallus gallus (chicken) ]

    Gene ID: 101747587, updated on 17-Aug-2024

    Summary

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    Symbol
    LOC101747587provided by CGNC
    Full Name
    polyubiquitin-C-likeprovided by CGNC
    Primary source
    CGNC:67085
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Also known as
    UBB; UbI
    Orthologs
    human mouse all
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    Genomic context

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    See LOC101747587 in Genome Data Viewer
    Location:
    chromosome: 19
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 19 NC_052550.1 (7069957..7072005)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 19 NC_052591.1 (6806859..6808910)

    Chromosome 19 - NC_052550.1Genomic Context describing neighboring genes Neighboring gene nuclear receptor corepressor 1 Neighboring gene phosphatidylinositol glycan anchor biosynthesis class L Neighboring gene centromere protein V Neighboring gene transient receptor potential cation channel subfamily V member 2 Neighboring gene purinergic receptor P2X 5 Neighboring gene germ cell associated 2, haspin Neighboring gene ER membrane protein complex subunit 6

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Heat-shock inducible polyubiquitin gene UbI undergoes alternative initiation and alternative splicing in mature chicken testes. Mezquita J, et al. Mol Reprod Dev, 1997 Apr. PMID 9094093
    2. The chicken ubiquitin gene contains a heat shock promoter and expresses an unstable mRNA in heat-shocked cells. Bond U, et al. Mol Cell Biol, 1986 Dec. PMID 3025663, Free PMC Article
    3. Ubiquitin is a heat shock protein in chicken embryo fibroblasts. Bond U, et al. Mol Cell Biol, 1985 May. PMID 2987683, Free PMC Article
    4. The myostatin-induced E3 ubiquitin ligase RNF13 negatively regulates the proliferation of chicken myoblasts. Zhang Q, et al. FEBS J, 2010 Jan. PMID 20015074
    5. Effects of histone acetylation, ubiquitination and variants on nucleosome stability. Li W, et al. Biochem J, 1993 Dec 15. PMID 8280071, Free PMC Article

    See all (7) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein tag activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ubiquitin protein ligase binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in modification-dependent protein catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein ubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    polyubiquitin-B
    Names
    polyubiquitin
    ubiquitin B

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001353988.2 → NP_001340917.1  polyubiquitin-B

      Status: VALIDATED

      Source sequence(s)
      JAENSK010000323
      UniProtKB/Swiss-Prot
      P0CG62
      Conserved Domains (1) summary
      cd01803
      Location:77 → 152
      Ubl_ubiquitin; ubiquitin-like (Ubl) domain found in ubiquitin

    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052550.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      7069957..7072005
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_004946664.5 → XP_004946721.1  polyubiquitin-B isoform X1

      See identical proteins and their annotated locations for XP_004946721.1

      UniProtKB/Swiss-Prot
      P0CG62
      Conserved Domains (1) summary
      cd01803
      Location:77 → 152
      Ubl_ubiquitin; ubiquitin-like (Ubl) domain found in ubiquitin

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052591.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      6806859..6808910
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_046929835.1 → XP_046785791.1  polyubiquitin-B isoform X1

      UniProtKB/Swiss-Prot
      P0CG62

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_001079474.1: Suppressed sequence

      Description
      NM_001079474.1: This RefSeq was suppressed temporarily based on the calculation that the encoded protein was shorter than proteins from the putative ortholog from rat: Ubc (GeneID:50522).
    Nucleotide Protein
    Heading Accession and Version

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