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    PDE6D phosphodiesterase 6D [ Ovis aries (sheep) ]

    Gene ID: 101108369, updated on 8-Mar-2024

    Summary

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    Gene symbol
    PDE6D
    Gene description
    phosphodiesterase 6D
    See related
    EnsemblRapid:ENSOARG00020011528
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Ovis aries
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Caprinae; Ovis
    Orthologs
    human mouse all
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    Genomic context

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    See PDE6D in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2023_10 current ARS-UI_Ramb_v3.0 (GCF_016772045.2) 2 NC_056055.1 (233428545..233484795, complement)

    Chromosome 2 - NC_056055.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105610100 Neighboring gene prothymosin alpha Neighboring gene transfer RNA lysine (anticodon UUU) Neighboring gene transfer RNA serine (anticodon GGA) Neighboring gene COP9 signalosome subunit 7B Neighboring gene large ribosomal subunit protein uL23-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_056055.1 Chromosome 2 Reference ARS-UI_Ramb_v3.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in sensory perception of light stimulus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    retinal rod rhodopsin-sensitive cGMP 3',5'-cyclic phosphodiesterase subunit delta
    Names
    phosphodiesterase 6D, cGMP-specific, rod, delta

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_016772045.2-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UI_Ramb_v3.0 Primary Assembly

    Genomic

    1. NC_056055.1 Reference ARS-UI_Ramb_v3.0 Primary Assembly

      Range
      233428545..233484795 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_004005001.6 → XP_004005050.1  retinal rod rhodopsin-sensitive cGMP 3',5'-cyclic phosphodiesterase subunit delta

      See identical proteins and their annotated locations for XP_004005050.1

      UniProtKB/TrEMBL
      A0A6P3EA65, W5QHS3
      Related
      ENSOARP00020039847.1, ENSOART00020070962.1
      Conserved Domains (1) summary
      pfam05351
      Location:10 → 149
      GMP_PDE_delta; GMP-PDE, delta subunit
    Nucleotide Protein Strain
    Heading Accession and Version

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    Research Materials