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    COL5A1 collagen type V alpha 1 chain [ Ovis aries (sheep) ]

    Gene ID: 101107777, updated on 8-Mar-2024

    Summary

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    Gene symbol
    COL5A1
    Gene description
    collagen type V alpha 1 chain
    See related
    EnsemblRapid:ENSOARG00020001060
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Ovis aries
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Caprinae; Ovis
    Orthologs
    human mouse all
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    Genomic context

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    See COL5A1 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    67
    Annotation release Status Assembly Chr Location
    RS_2023_10 current ARS-UI_Ramb_v3.0 (GCF_016772045.2) 3 NC_056056.1 (1554466..1693746, complement)

    Chromosome 3 - NC_056056.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC132659542 Neighboring gene ficolin-2 Neighboring gene uncharacterized LOC105612347 Neighboring gene retinoid X receptor alpha

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_056056.1 Chromosome 3 Reference ARS-UI_Ramb_v3.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables extracellular matrix structural constituent IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    collagen alpha-1(V) chain

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_016772045.2-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UI_Ramb_v3.0 Primary Assembly

    Genomic

    1. NC_056056.1 Reference ARS-UI_Ramb_v3.0 Primary Assembly

      Range
      1554466..1693746 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_027966118.2 → XP_027821919.2  collagen alpha-1(V) chain isoform X2

      UniProtKB/TrEMBL
      A0A836AHQ9
      Related
      ENSOARP00020002058.2, ENSOART00020002481.2
      Conserved Domains (2) summary
      smart00038
      Location:1618 → 1847
      COLFI; Fibrillar collagens C-terminal domain
      smart00210
      Location:45 → 236
      TSPN; Thrombospondin N-terminal -like domains

    2. XM_027966117.2 → XP_027821918.2  collagen alpha-1(V) chain isoform X1

      UniProtKB/TrEMBL
      A0A836AHQ9
      Related
      ENSOARP00020001903.2, ENSOART00020002273.2
      Conserved Domains (2) summary
      smart00038
      Location:1618 → 1847
      COLFI; Fibrillar collagens C-terminal domain
      smart00210
      Location:45 → 236
      TSPN; Thrombospondin N-terminal -like domains
    Nucleotide Protein Strain
    Heading Accession and Version

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