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    ZSCAN29 zinc finger and SCAN domain containing 29 [ Canis lupus familiaris (dog) ]

    Gene ID: 100856740, updated on 17-Aug-2024

    Summary

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    Official Symbol
    ZSCAN29provided by VGNC
    Official Full Name
    zinc finger and SCAN domain containing 29provided by VGNC
    Primary source
    VGNC:VGNC:48853
    See related
    Ensembl:ENSCAFG00845023067
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Canis lupus familiaris (sub-species: familiaris)
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
    Orthologs
    human mouse all
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    Genomic context

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    See ZSCAN29 in Genome Data Viewer
    Location:
    chromosome: 30
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    106 current ROS_Cfam_1.0 (GCF_014441545.1) 30 NC_051834.1 (10351589..10362444, complement)
    106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 30 NC_006612.4 (10274372..10285214, complement)
    106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 30 NC_049251.1 (10509207..10520051, complement)
    106 current UMICH_Zoey_3.1 (GCF_005444595.1) 30 NC_049290.1 (10268171..10279010, complement)
    106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 30 NC_049771.1 (10389263..10400109, complement)

    Chromosome 30 - NC_051834.1Genomic Context describing neighboring genes Neighboring gene U5 spliceosomal RNA Neighboring gene leucine carboxyl methyltransferase 2 Neighboring gene adenosine deaminase like Neighboring gene tubulin gamma complex component 4 Neighboring gene tumor protein p53 binding protein 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    zinc finger and SCAN domain-containing protein 29

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ROS_Cfam_1.0

    Genomic

    1. NC_051834.1 Reference ROS_Cfam_1.0

      Range
      10351589..10362444 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038442146.1 → XP_038298074.1  zinc finger and SCAN domain-containing protein 29

      UniProtKB/TrEMBL
      A0A8C0JPW2, A0A8C0T0X1, A0A8I3PM45
      Related
      ENSCAFP00845031870.1, ENSCAFT00845040715.1
      Conserved Domains (4) summary
      smart00431
      Location:14 → 124
      SCAN; leucine rich region
      COG5048
      Location:676 → 836
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:680 → 700
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam13837
      Location:407 → 488
      Myb_DNA-bind_4; Myb/SANT-like DNA-binding domain

    2. XM_038442144.1 → XP_038298072.1  zinc finger and SCAN domain-containing protein 29

      UniProtKB/TrEMBL
      A0A8C0JPW2, A0A8C0T0X1, A0A8I3PM45
      Conserved Domains (4) summary
      smart00431
      Location:14 → 124
      SCAN; leucine rich region
      COG5048
      Location:676 → 836
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:680 → 700
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam13837
      Location:407 → 488
      Myb_DNA-bind_4; Myb/SANT-like DNA-binding domain

    3. XM_038442145.1 → XP_038298073.1  zinc finger and SCAN domain-containing protein 29

      UniProtKB/TrEMBL
      A0A8C0JPW2, A0A8C0T0X1, A0A8I3PM45
      Conserved Domains (4) summary
      smart00431
      Location:14 → 124
      SCAN; leucine rich region
      COG5048
      Location:676 → 836
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:680 → 700
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam13837
      Location:407 → 488
      Myb_DNA-bind_4; Myb/SANT-like DNA-binding domain

    4. XM_038442143.1 → XP_038298071.1  zinc finger and SCAN domain-containing protein 29

      UniProtKB/TrEMBL
      A0A8C0JPW2, A0A8C0T0X1, A0A8I3PM45
      Conserved Domains (4) summary
      smart00431
      Location:14 → 124
      SCAN; leucine rich region
      COG5048
      Location:676 → 836
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:680 → 700
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam13837
      Location:407 → 488
      Myb_DNA-bind_4; Myb/SANT-like DNA-binding domain

    Alternate UMICH_Zoey_3.1

    Genomic

    1. NC_049290.1 Alternate UMICH_Zoey_3.1

      Range
      10268171..10279010 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038516620.1 → XP_038372548.1  zinc finger and SCAN domain-containing protein 29

      Conserved Domains (4) summary
      smart00431
      Location:14 → 124
      SCAN; leucine rich region
      COG5048
      Location:676 → 836
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:680 → 700
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam13837
      Location:407 → 488
      Myb_DNA-bind_4; Myb/SANT-like DNA-binding domain

    2. XM_038516618.1 → XP_038372546.1  zinc finger and SCAN domain-containing protein 29

      Conserved Domains (4) summary
      smart00431
      Location:14 → 124
      SCAN; leucine rich region
      COG5048
      Location:676 → 836
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:680 → 700
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam13837
      Location:407 → 488
      Myb_DNA-bind_4; Myb/SANT-like DNA-binding domain

    3. XM_038516619.1 → XP_038372547.1  zinc finger and SCAN domain-containing protein 29

      Conserved Domains (4) summary
      smart00431
      Location:14 → 124
      SCAN; leucine rich region
      COG5048
      Location:676 → 836
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:680 → 700
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam13837
      Location:407 → 488
      Myb_DNA-bind_4; Myb/SANT-like DNA-binding domain

    4. XM_038516617.1 → XP_038372545.1  zinc finger and SCAN domain-containing protein 29

      Conserved Domains (4) summary
      smart00431
      Location:14 → 124
      SCAN; leucine rich region
      COG5048
      Location:676 → 836
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:680 → 700
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam13837
      Location:407 → 488
      Myb_DNA-bind_4; Myb/SANT-like DNA-binding domain

    Alternate UNSW_CanFamBas_1.0

    Genomic

    1. NC_049771.1 Alternate UNSW_CanFamBas_1.0

      Range
      10389263..10400109 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038644521.1 → XP_038500449.1  zinc finger and SCAN domain-containing protein 29

      Conserved Domains (4) summary
      smart00431
      Location:14 → 124
      SCAN; leucine rich region
      COG5048
      Location:676 → 836
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:680 → 700
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam13837
      Location:407 → 488
      Myb_DNA-bind_4; Myb/SANT-like DNA-binding domain

    2. XM_038644519.1 → XP_038500447.1  zinc finger and SCAN domain-containing protein 29

      Conserved Domains (4) summary
      smart00431
      Location:14 → 124
      SCAN; leucine rich region
      COG5048
      Location:676 → 836
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:680 → 700
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam13837
      Location:407 → 488
      Myb_DNA-bind_4; Myb/SANT-like DNA-binding domain

    3. XM_038644520.1 → XP_038500448.1  zinc finger and SCAN domain-containing protein 29

      Conserved Domains (4) summary
      smart00431
      Location:14 → 124
      SCAN; leucine rich region
      COG5048
      Location:676 → 836
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:680 → 700
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam13837
      Location:407 → 488
      Myb_DNA-bind_4; Myb/SANT-like DNA-binding domain

    4. XM_038644518.1 → XP_038500446.1  zinc finger and SCAN domain-containing protein 29

      Conserved Domains (4) summary
      smart00431
      Location:14 → 124
      SCAN; leucine rich region
      COG5048
      Location:676 → 836
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:680 → 700
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam13837
      Location:407 → 488
      Myb_DNA-bind_4; Myb/SANT-like DNA-binding domain

    Alternate UU_Cfam_GSD_1.0

    Genomic

    1. NC_049251.1 Alternate UU_Cfam_GSD_1.0

      Range
      10509207..10520051 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038580239.1 → XP_038436167.1  zinc finger and SCAN domain-containing protein 29

      UniProtKB/TrEMBL
      A0A8C0JPW2, A0A8C0T0X1, A0A8I3PM45
      Conserved Domains (4) summary
      smart00431
      Location:14 → 124
      SCAN; leucine rich region
      COG5048
      Location:676 → 836
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:680 → 700
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam13837
      Location:407 → 488
      Myb_DNA-bind_4; Myb/SANT-like DNA-binding domain

    2. XM_038580237.1 → XP_038436165.1  zinc finger and SCAN domain-containing protein 29

      UniProtKB/TrEMBL
      A0A8C0JPW2, A0A8C0T0X1, A0A8I3PM45
      Conserved Domains (4) summary
      smart00431
      Location:14 → 124
      SCAN; leucine rich region
      COG5048
      Location:676 → 836
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:680 → 700
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam13837
      Location:407 → 488
      Myb_DNA-bind_4; Myb/SANT-like DNA-binding domain

    3. XM_038580238.1 → XP_038436166.1  zinc finger and SCAN domain-containing protein 29

      UniProtKB/TrEMBL
      A0A8C0JPW2, A0A8C0T0X1, A0A8I3PM45
      Conserved Domains (4) summary
      smart00431
      Location:14 → 124
      SCAN; leucine rich region
      COG5048
      Location:676 → 836
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:680 → 700
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam13837
      Location:407 → 488
      Myb_DNA-bind_4; Myb/SANT-like DNA-binding domain

    4. XM_038580236.1 → XP_038436164.1  zinc finger and SCAN domain-containing protein 29

      UniProtKB/TrEMBL
      A0A8C0JPW2, A0A8C0T0X1, A0A8I3PM45
      Conserved Domains (4) summary
      smart00431
      Location:14 → 124
      SCAN; leucine rich region
      COG5048
      Location:676 → 836
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:680 → 700
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam13837
      Location:407 → 488
      Myb_DNA-bind_4; Myb/SANT-like DNA-binding domain

    Alternate Dog10K_Boxer_Tasha Primary Assembly

    Genomic

    1. NC_006612.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

      Range
      10274372..10285214 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005638335.4 → XP_005638392.1  zinc finger and SCAN domain-containing protein 29

      See identical proteins and their annotated locations for XP_005638392.1

      UniProtKB/TrEMBL
      A0A8C0JPW2, A0A8C0T0X1, A0A8I3PM45
      Conserved Domains (4) summary
      smart00431
      Location:14 → 124
      SCAN; leucine rich region
      COG5048
      Location:676 → 836
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:680 → 700
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam13837
      Location:407 → 488
      Myb_DNA-bind_4; Myb/SANT-like DNA-binding domain

    2. XM_005638333.4 → XP_005638390.1  zinc finger and SCAN domain-containing protein 29

      See identical proteins and their annotated locations for XP_005638390.1

      UniProtKB/TrEMBL
      A0A8C0JPW2, A0A8C0T0X1, A0A8I3PM45
      Conserved Domains (4) summary
      smart00431
      Location:14 → 124
      SCAN; leucine rich region
      COG5048
      Location:676 → 836
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:680 → 700
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam13837
      Location:407 → 488
      Myb_DNA-bind_4; Myb/SANT-like DNA-binding domain

    3. XM_005638334.4 → XP_005638391.1  zinc finger and SCAN domain-containing protein 29

      See identical proteins and their annotated locations for XP_005638391.1

      UniProtKB/TrEMBL
      A0A8C0JPW2, A0A8C0T0X1, A0A8I3PM45
      Conserved Domains (4) summary
      smart00431
      Location:14 → 124
      SCAN; leucine rich region
      COG5048
      Location:676 → 836
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:680 → 700
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam13837
      Location:407 → 488
      Myb_DNA-bind_4; Myb/SANT-like DNA-binding domain

    4. XM_003640046.5 → XP_003640094.1  zinc finger and SCAN domain-containing protein 29

      See identical proteins and their annotated locations for XP_003640094.1

      UniProtKB/TrEMBL
      A0A8C0JPW2, A0A8C0T0X1, A0A8I3PM45
      Conserved Domains (4) summary
      smart00431
      Location:14 → 124
      SCAN; leucine rich region
      COG5048
      Location:676 → 836
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:680 → 700
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam13837
      Location:407 → 488
      Myb_DNA-bind_4; Myb/SANT-like DNA-binding domain
    Nucleotide Protein
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