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    SIDT2 SID1 transmembrane family member 2 [ Canis lupus familiaris (dog) ]

    Gene ID: 100856519, updated on 17-Aug-2024

    Summary

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    Official Symbol
    SIDT2provided by VGNC
    Official Full Name
    SID1 transmembrane family member 2provided by VGNC
    Primary source
    VGNC:VGNC:46166
    See related
    Ensembl:ENSCAFG00845004135
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Canis lupus familiaris (sub-species: familiaris)
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
    Orthologs
    human mouse all
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    Genomic context

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    See SIDT2 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    28
    Annotation release Status Assembly Chr Location
    106 current ROS_Cfam_1.0 (GCF_014441545.1) 5 NC_051809.1 (16341802..16356831, complement)
    106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 5 NC_006587.4 (16449904..16464935, complement)
    106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 5 NC_049226.1 (16424733..16439751, complement)
    106 current UMICH_Zoey_3.1 (GCF_005444595.1) 5 NC_049265.1 (16480045..16495069, complement)
    106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 5 NC_049746.1 (16382498..16397535, complement)

    Chromosome 5 - NC_051809.1Genomic Context describing neighboring genes Neighboring gene ring finger protein 214 Neighboring gene proprotein convertase subtilisin/kexin type 7 Neighboring gene transgelin Neighboring gene uncharacterized LOC119871805 Neighboring gene platelet activating factor acetylhydrolase 1b catalytic subunit 2 Neighboring gene microRNA mir-8871 Neighboring gene uncharacterized LOC111095817

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    LOW QUALITY PROTEIN: SID1 transmembrane family member 2; SID1 transmembrane family member 2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ROS_Cfam_1.0

    Genomic

    1. NC_051809.1 Reference ROS_Cfam_1.0

      Range
      16341802..16356831 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038664780.1 → XP_038520708.1  SID1 transmembrane family member 2 isoform X2

      UniProtKB/TrEMBL
      A0A8C0JKX9, A0A8C0MAW9, A0A8C0MFT4, A0A8I3MTU7
      Related
      ENSCAFP00845005889.1, ENSCAFT00845007452.1
      Conserved Domains (1) summary
      pfam13965
      Location:170 → 832
      SID-1_RNA_chan; dsRNA-gated channel SID-1

    2. XM_038664779.1 → XP_038520707.1  SID1 transmembrane family member 2 isoform X1

      UniProtKB/TrEMBL
      A0A8C0MFT4
      Conserved Domains (1) summary
      pfam13965
      Location:170 → 836
      SID-1_RNA_chan; dsRNA-gated channel SID-1

    3. XM_038664781.1 → XP_038520709.1  SID1 transmembrane family member 2 isoform X3

      Conserved Domains (1) summary
      pfam13965
      Location:8 → 454
      SID-1_RNA_chan; dsRNA-gated channel SID-1

    Alternate UMICH_Zoey_3.1

    Genomic

    1. NC_049265.1 Alternate UMICH_Zoey_3.1

      Range
      16480045..16495069 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038474915.1 → XP_038330843.1  SID1 transmembrane family member 2 isoform X2

      Conserved Domains (1) summary
      pfam13965
      Location:170 → 832
      SID-1_RNA_chan; dsRNA-gated channel SID-1

    2. XM_038474913.1 → XP_038330841.1  SID1 transmembrane family member 2 isoform X1

      Conserved Domains (1) summary
      pfam13965
      Location:170 → 836
      SID-1_RNA_chan; dsRNA-gated channel SID-1

    3. XM_038474916.1 → XP_038330844.1  SID1 transmembrane family member 2 isoform X3

      Conserved Domains (1) summary
      pfam13965
      Location:8 → 454
      SID-1_RNA_chan; dsRNA-gated channel SID-1

    Alternate UNSW_CanFamBas_1.0

    Genomic

    1. NC_049746.1 Alternate UNSW_CanFamBas_1.0

      Range
      16382498..16397535 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038600243.1 → XP_038456171.1  SID1 transmembrane family member 2 isoform X2

      Conserved Domains (1) summary
      pfam13965
      Location:170 → 832
      SID-1_RNA_chan; dsRNA-gated channel SID-1

    2. XM_038600242.1 → XP_038456170.1  SID1 transmembrane family member 2 isoform X1

      Conserved Domains (1) summary
      pfam13965
      Location:170 → 836
      SID-1_RNA_chan; dsRNA-gated channel SID-1

    3. XM_038600244.1 → XP_038456172.1  SID1 transmembrane family member 2 isoform X3

      Conserved Domains (1) summary
      pfam13965
      Location:8 → 454
      SID-1_RNA_chan; dsRNA-gated channel SID-1

    Alternate UU_Cfam_GSD_1.0

    Genomic

    1. NC_049226.1 Alternate UU_Cfam_GSD_1.0

      Range
      16424733..16439751 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038536043.1 → XP_038391971.1  LOW QUALITY PROTEIN: SID1 transmembrane family member 2 isoform X1

      UniProtKB/TrEMBL
      A0A8C0MFT4
      Conserved Domains (1) summary
      pfam13965
      Location:170 → 836
      SID-1_RNA_chan; dsRNA-gated channel SID-1

    Alternate Dog10K_Boxer_Tasha Primary Assembly

    Genomic

    1. NC_006587.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

      Range
      16449904..16464935 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038509422.1 → XP_038365350.1  SID1 transmembrane family member 2 isoform X2

      UniProtKB/TrEMBL
      A0A8C0JKX9, A0A8C0MAW9, A0A8C0MFT4, A0A8I3MTU7
      Conserved Domains (1) summary
      pfam13965
      Location:170 → 832
      SID-1_RNA_chan; dsRNA-gated channel SID-1

    2. XM_038509418.1 → XP_038365346.1  SID1 transmembrane family member 2 isoform X1

      UniProtKB/TrEMBL
      A0A8C0MFT4
      Conserved Domains (1) summary
      pfam13965
      Location:170 → 836
      SID-1_RNA_chan; dsRNA-gated channel SID-1

    3. XM_038509426.1 → XP_038365354.1  SID1 transmembrane family member 2 isoform X3

      Conserved Domains (1) summary
      pfam13965
      Location:8 → 454
      SID-1_RNA_chan; dsRNA-gated channel SID-1
    Nucleotide Protein
    Heading Accession and Version

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