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    ABT1 activator of basal transcription 1 [ Canis lupus familiaris (dog) ]

    Gene ID: 100856389, updated on 17-Aug-2024

    Summary

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    Official Symbol
    ABT1provided by VGNC
    Official Full Name
    activator of basal transcription 1provided by VGNC
    Primary source
    VGNC:VGNC:37485
    See related
    Ensembl:ENSCAFG00845015131
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Canis lupus familiaris (sub-species: familiaris)
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
    Orthologs
    human mouse all
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    Genomic context

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    See ABT1 in Genome Data Viewer
    Location:
    chromosome: 35
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    106 current ROS_Cfam_1.0 (GCF_014441545.1) 35 NC_051839.1 (24541116..24544341)
    106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 35 NC_006617.4 (24214359..24217582)
    106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 35 NC_049256.1 (25838596..25841815)
    106 current UMICH_Zoey_3.1 (GCF_005444595.1) 35 NC_049295.1 (24322029..24325257)
    106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 35 NC_049776.1 (24373956..24377179)

    Chromosome 35 - NC_051839.1Genomic Context describing neighboring genes Neighboring gene transfer RNA tyrosine (anticodon GUA) Neighboring gene transfer RNA tyrosine (anticodon GUA) Neighboring gene transfer RNA asparagine (anticodon GUU) Neighboring gene zinc finger protein 322 Neighboring gene 60S ribosomal protein L23a-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in small-subunit processome assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleolus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    LOW QUALITY PROTEIN: activator of basal transcription 1; activator of basal transcription 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ROS_Cfam_1.0

    Genomic

    1. NC_051839.1 Reference ROS_Cfam_1.0

      Range
      24541116..24544341
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038446586.1 → XP_038302514.1  activator of basal transcription 1

      UniProtKB/TrEMBL
      A0A8C0JQF6, A0A8C0S138
      Related
      ENSCAFP00845021266.1, ENSCAFT00845027025.1
      Conserved Domains (1) summary
      cd12263
      Location:46 → 152
      RRM_ABT1_like; RNA recognition motif (RRM) found in activator of basal transcription 1 (ABT1) and similar proteins

    Alternate UMICH_Zoey_3.1

    Genomic

    1. NC_049295.1 Alternate UMICH_Zoey_3.1

      Range
      24322029..24325257
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038520712.1 → XP_038376640.1  LOW QUALITY PROTEIN: activator of basal transcription 1

    Alternate UNSW_CanFamBas_1.0

    Genomic

    1. NC_049776.1 Alternate UNSW_CanFamBas_1.0

      Range
      24373956..24377179
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038648759.1 → XP_038504687.1  activator of basal transcription 1

      Conserved Domains (1) summary
      cd12263
      Location:46 → 152
      RRM_ABT1_like; RNA recognition motif (RRM) found in activator of basal transcription 1 (ABT1) and similar proteins

    Alternate UU_Cfam_GSD_1.0

    Genomic

    1. NC_049256.1 Alternate UU_Cfam_GSD_1.0

      Range
      25838596..25841815
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038584400.1 → XP_038440328.1  activator of basal transcription 1

      UniProtKB/TrEMBL
      A0A8C0JQF6, A0A8C0S138
      Conserved Domains (1) summary
      cd12263
      Location:46 → 152
      RRM_ABT1_like; RNA recognition motif (RRM) found in activator of basal transcription 1 (ABT1) and similar proteins

    Alternate Dog10K_Boxer_Tasha Primary Assembly

    Genomic

    1. NC_006617.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

      Range
      24214359..24217582
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_003640168.5 → XP_003640216.1  activator of basal transcription 1

      UniProtKB/TrEMBL
      A0A8C0JQF6, A0A8C0S138
      Conserved Domains (1) summary
      cd12263
      Location:46 → 152
      RRM_ABT1_like; RNA recognition motif (RRM) found in activator of basal transcription 1 (ABT1) and similar proteins
    Nucleotide Protein
    Heading Accession and Version

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