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    SMARCAD1 SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1 [ Canis lupus familiaris (dog) ]

    Gene ID: 100856284, updated on 17-Aug-2024

    Summary

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    Official Symbol
    SMARCAD1provided by VGNC
    Official Full Name
    SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1provided by VGNC
    Primary source
    VGNC:VGNC:46532
    See related
    Ensembl:ENSCAFG00845020527
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Canis lupus familiaris (sub-species: familiaris)
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
    Orthologs
    human mouse all
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    Genomic context

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    See SMARCAD1 in Genome Data Viewer
    Location:
    chromosome: 32
    Exon count:
    27
    Annotation release Status Assembly Chr Location
    106 current ROS_Cfam_1.0 (GCF_014441545.1) 32 NC_051836.1 (17268012..17346503)
    106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 32 NC_006614.4 (24781866..24860142, complement)
    106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 32 NC_049253.1 (22758880..22837193, complement)
    106 current UMICH_Zoey_3.1 (GCF_005444595.1) 32 NC_049292.1 (17240273..17318583)
    106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 32 NC_049773.1 (17054568..17132878)

    Chromosome 32 - NC_051836.1Genomic Context describing neighboring genes Neighboring gene atonal bHLH transcription factor 1 Neighboring gene uncharacterized LOC106558121 Neighboring gene uncharacterized LOC106558143 Neighboring gene hematopoietic prostaglandin D synthase Neighboring gene PDZ and LIM domain 5 Neighboring gene ubiquitin-conjugating enzyme E2 variant 1-like Neighboring gene uncharacterized LOC111093604 Neighboring gene bone morphogenetic protein receptor type 1B

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP-dependent chromatin remodeler activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables chromatin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ubiquitin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1

    NCBI Reference Sequences (RefSeq)

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    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ROS_Cfam_1.0

    Genomic

    1. NC_051836.1 Reference ROS_Cfam_1.0

      Range
      17268012..17346503
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038444149.1 → XP_038300077.1  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1 isoform X1

      UniProtKB/TrEMBL
      A0A8P0SW10
      Related
      ENSCAFP00845028330.1, ENSCAFT00845036206.1
      Conserved Domains (2) summary
      PLN03142
      Location:476 → 998
      PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
      cd17998
      Location:497 → 679
      DEXHc_SMARCAD1; DEXH-box helicase domain of SMARCAD1

    2. XM_038444151.1 → XP_038300079.1  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1 isoform X1

      UniProtKB/TrEMBL
      A0A8P0SW10
      Conserved Domains (2) summary
      PLN03142
      Location:476 → 998
      PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
      cd17998
      Location:497 → 679
      DEXHc_SMARCAD1; DEXH-box helicase domain of SMARCAD1

    3. XM_038444147.1 → XP_038300075.1  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1 isoform X1

      UniProtKB/TrEMBL
      A0A8P0SW10
      Conserved Domains (2) summary
      PLN03142
      Location:476 → 998
      PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
      cd17998
      Location:497 → 679
      DEXHc_SMARCAD1; DEXH-box helicase domain of SMARCAD1

    4. XM_038444148.1 → XP_038300076.1  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1 isoform X2

      UniProtKB/TrEMBL
      A0A8I3P4U0, A0A8P0PS06
      Conserved Domains (2) summary
      PLN03142
      Location:475 → 997
      PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
      cd17998
      Location:496 → 678
      DEXHc_SMARCAD1; DEXH-box helicase domain of SMARCAD1

    5. XM_038444150.1 → XP_038300078.1  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1 isoform X1

      UniProtKB/TrEMBL
      A0A8P0SW10
      Conserved Domains (2) summary
      PLN03142
      Location:476 → 998
      PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
      cd17998
      Location:497 → 679
      DEXHc_SMARCAD1; DEXH-box helicase domain of SMARCAD1

    6. XM_038444152.1 → XP_038300080.1  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1 isoform X3

      UniProtKB/TrEMBL
      A0A8C0T317, A0A8P0SW10
      Conserved Domains (2) summary
      PLN03142
      Location:448 → 970
      PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
      cd17998
      Location:469 → 651
      DEXHc_SMARCAD1; DEXH-box helicase domain of SMARCAD1

    7. XM_038444153.1 → XP_038300081.1  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1 isoform X4

      UniProtKB/TrEMBL
      A0A8I3S1U7, A0A8P0PRE1
      Related
      ENSCAFP00845028474.1, ENSCAFT00845036375.1
      Conserved Domains (2) summary
      PLN03142
      Location:46 → 568
      PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
      cd17998
      Location:67 → 249
      DEXHc_SMARCAD1; DEXH-box helicase domain of SMARCAD1

    Alternate UMICH_Zoey_3.1

    Genomic

    1. NC_049292.1 Alternate UMICH_Zoey_3.1

      Range
      17240273..17318583
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038518540.1 → XP_038374468.1  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1 isoform X1

      Conserved Domains (2) summary
      PLN03142
      Location:476 → 998
      PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
      cd17998
      Location:497 → 679
      DEXHc_SMARCAD1; DEXH-box helicase domain of SMARCAD1

    2. XM_038518542.1 → XP_038374470.1  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1 isoform X1

      Conserved Domains (2) summary
      PLN03142
      Location:476 → 998
      PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
      cd17998
      Location:497 → 679
      DEXHc_SMARCAD1; DEXH-box helicase domain of SMARCAD1

    3. XM_038518537.1 → XP_038374465.1  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1 isoform X1

      Conserved Domains (2) summary
      PLN03142
      Location:476 → 998
      PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
      cd17998
      Location:497 → 679
      DEXHc_SMARCAD1; DEXH-box helicase domain of SMARCAD1

    4. XM_038518538.1 → XP_038374466.1  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1 isoform X2

      Conserved Domains (2) summary
      PLN03142
      Location:475 → 997
      PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
      cd17998
      Location:496 → 678
      DEXHc_SMARCAD1; DEXH-box helicase domain of SMARCAD1

    5. XM_038518541.1 → XP_038374469.1  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1 isoform X1

      Conserved Domains (2) summary
      PLN03142
      Location:476 → 998
      PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
      cd17998
      Location:497 → 679
      DEXHc_SMARCAD1; DEXH-box helicase domain of SMARCAD1

    6. XM_038518543.1 → XP_038374471.1  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1 isoform X3

      Conserved Domains (2) summary
      PLN03142
      Location:448 → 970
      PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
      cd17998
      Location:469 → 651
      DEXHc_SMARCAD1; DEXH-box helicase domain of SMARCAD1

    7. XM_038518544.1 → XP_038374472.1  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1 isoform X4

      Conserved Domains (2) summary
      PLN03142
      Location:46 → 568
      PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
      cd17998
      Location:67 → 249
      DEXHc_SMARCAD1; DEXH-box helicase domain of SMARCAD1

    Alternate UNSW_CanFamBas_1.0

    Genomic

    1. NC_049773.1 Alternate UNSW_CanFamBas_1.0

      Range
      17054568..17132878
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038646486.1 → XP_038502414.1  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1 isoform X1

      Conserved Domains (2) summary
      PLN03142
      Location:476 → 998
      PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
      cd17998
      Location:497 → 679
      DEXHc_SMARCAD1; DEXH-box helicase domain of SMARCAD1

    2. XM_038646488.1 → XP_038502416.1  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1 isoform X1

      Conserved Domains (2) summary
      PLN03142
      Location:476 → 998
      PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
      cd17998
      Location:497 → 679
      DEXHc_SMARCAD1; DEXH-box helicase domain of SMARCAD1

    3. XM_038646484.1 → XP_038502412.1  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1 isoform X1

      Conserved Domains (2) summary
      PLN03142
      Location:476 → 998
      PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
      cd17998
      Location:497 → 679
      DEXHc_SMARCAD1; DEXH-box helicase domain of SMARCAD1

    4. XM_038646485.1 → XP_038502413.1  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1 isoform X2

      Conserved Domains (2) summary
      PLN03142
      Location:475 → 997
      PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
      cd17998
      Location:496 → 678
      DEXHc_SMARCAD1; DEXH-box helicase domain of SMARCAD1

    5. XM_038646487.1 → XP_038502415.1  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1 isoform X1

      Conserved Domains (2) summary
      PLN03142
      Location:476 → 998
      PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
      cd17998
      Location:497 → 679
      DEXHc_SMARCAD1; DEXH-box helicase domain of SMARCAD1

    6. XM_038646489.1 → XP_038502417.1  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1 isoform X3

      Conserved Domains (2) summary
      PLN03142
      Location:448 → 970
      PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
      cd17998
      Location:469 → 651
      DEXHc_SMARCAD1; DEXH-box helicase domain of SMARCAD1

    7. XM_038646490.1 → XP_038502418.1  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1 isoform X4

      Conserved Domains (2) summary
      PLN03142
      Location:46 → 568
      PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
      cd17998
      Location:67 → 249
      DEXHc_SMARCAD1; DEXH-box helicase domain of SMARCAD1

    Alternate UU_Cfam_GSD_1.0

    Genomic

    1. NC_049253.1 Alternate UU_Cfam_GSD_1.0

      Range
      22758880..22837193 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038582123.1 → XP_038438051.1  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1 isoform X1

      UniProtKB/TrEMBL
      A0A8P0SW10
      Conserved Domains (2) summary
      PLN03142
      Location:476 → 998
      PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
      cd17998
      Location:497 → 679
      DEXHc_SMARCAD1; DEXH-box helicase domain of SMARCAD1

    2. XM_038582125.1 → XP_038438053.1  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1 isoform X1

      UniProtKB/TrEMBL
      A0A8P0SW10
      Conserved Domains (2) summary
      PLN03142
      Location:476 → 998
      PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
      cd17998
      Location:497 → 679
      DEXHc_SMARCAD1; DEXH-box helicase domain of SMARCAD1

    3. XM_038582122.1 → XP_038438050.1  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1 isoform X2

      UniProtKB/TrEMBL
      A0A8I3P4U0, A0A8P0PS06
      Conserved Domains (2) summary
      PLN03142
      Location:475 → 997
      PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
      cd17998
      Location:496 → 678
      DEXHc_SMARCAD1; DEXH-box helicase domain of SMARCAD1

    4. XM_038582121.1 → XP_038438049.1  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1 isoform X1

      UniProtKB/TrEMBL
      A0A8P0SW10
      Conserved Domains (2) summary
      PLN03142
      Location:476 → 998
      PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
      cd17998
      Location:497 → 679
      DEXHc_SMARCAD1; DEXH-box helicase domain of SMARCAD1

    5. XM_038582124.1 → XP_038438052.1  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1 isoform X1

      UniProtKB/TrEMBL
      A0A8P0SW10
      Conserved Domains (2) summary
      PLN03142
      Location:476 → 998
      PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
      cd17998
      Location:497 → 679
      DEXHc_SMARCAD1; DEXH-box helicase domain of SMARCAD1

    6. XM_038582126.1 → XP_038438054.1  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1 isoform X3

      UniProtKB/TrEMBL
      A0A8C0T317, A0A8P0SW10
      Conserved Domains (2) summary
      PLN03142
      Location:448 → 970
      PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
      cd17998
      Location:469 → 651
      DEXHc_SMARCAD1; DEXH-box helicase domain of SMARCAD1

    7. XM_038582127.1 → XP_038438055.1  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1 isoform X4

      UniProtKB/TrEMBL
      A0A8I3S1U7, A0A8P0PRE1
      Conserved Domains (2) summary
      PLN03142
      Location:46 → 568
      PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
      cd17998
      Location:67 → 249
      DEXHc_SMARCAD1; DEXH-box helicase domain of SMARCAD1

    Alternate Dog10K_Boxer_Tasha Primary Assembly

    Genomic

    1. NC_006614.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

      Range
      24781866..24860142 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005639195.4 → XP_005639252.1  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1 isoform X1

      See identical proteins and their annotated locations for XP_005639252.1

      UniProtKB/TrEMBL
      A0A8P0SW10
      Conserved Domains (2) summary
      PLN03142
      Location:476 → 998
      PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
      cd17998
      Location:497 → 679
      DEXHc_SMARCAD1; DEXH-box helicase domain of SMARCAD1

    2. XM_005639197.4 → XP_005639254.1  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1 isoform X1

      See identical proteins and their annotated locations for XP_005639254.1

      UniProtKB/TrEMBL
      A0A8P0SW10
      Conserved Domains (2) summary
      PLN03142
      Location:476 → 998
      PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
      cd17998
      Location:497 → 679
      DEXHc_SMARCAD1; DEXH-box helicase domain of SMARCAD1

    3. XM_014110001.3 → XP_013965476.1  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1 isoform X2

      UniProtKB/TrEMBL
      A0A8I3P4U0, A0A8P0PS06
      Conserved Domains (2) summary
      PLN03142
      Location:475 → 997
      PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
      cd17998
      Location:496 → 678
      DEXHc_SMARCAD1; DEXH-box helicase domain of SMARCAD1

    4. XM_005639196.4 → XP_005639253.1  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1 isoform X1

      See identical proteins and their annotated locations for XP_005639253.1

      UniProtKB/TrEMBL
      A0A8P0SW10
      Conserved Domains (2) summary
      PLN03142
      Location:476 → 998
      PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
      cd17998
      Location:497 → 679
      DEXHc_SMARCAD1; DEXH-box helicase domain of SMARCAD1

    5. XM_005639194.4 → XP_005639251.1  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1 isoform X1

      See identical proteins and their annotated locations for XP_005639251.1

      UniProtKB/TrEMBL
      A0A8P0SW10
      Conserved Domains (2) summary
      PLN03142
      Location:476 → 998
      PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
      cd17998
      Location:497 → 679
      DEXHc_SMARCAD1; DEXH-box helicase domain of SMARCAD1

    6. XM_022413624.2 → XP_022269332.2  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1 isoform X3

      UniProtKB/TrEMBL
      A0A8C0T317, A0A8P0SW10
      Conserved Domains (2) summary
      PLN03142
      Location:448 → 970
      PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
      cd17998
      Location:469 → 651
      DEXHc_SMARCAD1; DEXH-box helicase domain of SMARCAD1

    7. XM_005639200.4 → XP_005639257.1  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1 isoform X4

      UniProtKB/TrEMBL
      A0A8I3S1U7, A0A8P0PRE1
      Conserved Domains (2) summary
      PLN03142
      Location:46 → 568
      PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
      cd17998
      Location:67 → 249
      DEXHc_SMARCAD1; DEXH-box helicase domain of SMARCAD1
    Nucleotide Protein
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