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    Itga6 integrin subunit alpha 6 [ Cricetulus griseus (Chinese hamster) ]

    Gene ID: 100769534, updated on 8-Mar-2024

    Summary

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    Gene symbol
    Itga6
    Gene description
    integrin subunit alpha 6
    Locus tag
    I79_001272
    See related
    Ensembl:ENSCGRG00015002126
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Cricetulus griseus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Cricetidae; Cricetinae; Cricetulus
    Orthologs
    human mouse all
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    Genomic context

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    See Itga6 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    26
    Annotation release Status Assembly Chr Location
    104 current CriGri_1.0 (GCF_000223135.1) Unplaced Scaffold NW_003613606.1 (3017316..3083183)
    104 current CriGri-PICRH-1.0 (GCF_003668045.3) 6 NC_048599.1 (103316803..103382524, complement)

    NW_003613606.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC118239060 Neighboring gene distal-less homeobox 1 Neighboring gene distal-less homeobox 2 Neighboring gene pyruvate dehydrogenase kinase 1 Neighboring gene uncharacterized LOC118239940

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables integrin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cell adhesion mediated by integrin IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in cell-cell adhesion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in cell-matrix adhesion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in integrin-mediated signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in leukocyte migration IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in external side of plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of integrin complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    integrin alpha-6
    Names
    Integrin alpha-6
    integrin, alpha 6

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Cricetulus griseus Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference CriGri_1.0 Primary Assembly

    Genomic

    1. NW_003613606.1 Reference CriGri_1.0 Primary Assembly

      Range
      3017316..3083183
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_007645564.4 → XP_007643754.1  integrin alpha-6 isoform X1

      UniProtKB/TrEMBL
      A0A8C2MF01
      Conserved Domains (2) summary
      smart00191
      Location:374 → 425
      Int_alpha; Integrin alpha (beta-propellor repeats)
      pfam08441
      Location:464 → 939
      Integrin_alpha2; Integrin alpha

    2. XM_003495959.5 → XP_003496007.1  integrin alpha-6 isoform X2

      UniProtKB/TrEMBL
      A0A8C2MJB8
      Conserved Domains (3) summary
      smart00191
      Location:374 → 425
      Int_alpha; Integrin alpha (beta-propellor repeats)
      pfam00357
      Location:1038 → 1052
      Integrin_alpha; Integrin alpha cytoplasmic region
      pfam08441
      Location:464 → 939
      Integrin_alpha2; Integrin alpha

    Alternate CriGri-PICRH-1.0

    Genomic

    1. NC_048599.1 Alternate CriGri-PICRH-1.0

      Range
      103316803..103382524 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_027420194.2 → XP_027275995.1  integrin alpha-6 isoform X1

      UniProtKB/TrEMBL
      A0A8C2MF01, A0A9J7G4I9

    2. XM_027420195.2 → XP_027275996.1  integrin alpha-6 isoform X2

      UniProtKB/TrEMBL
      A0A8C2MJB8, A0A9J7JQY8
      Related
      ENSCGRP00015002738.2, ENSCGRT00015003382.2
    Nucleotide Protein Strain
    Heading Accession and Version

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