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    Dpf2 double PHD fingers 2 [ Cricetulus griseus (Chinese hamster) ]

    Gene ID: 100767725, updated on 8-Mar-2024

    Summary

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    Gene symbol
    Dpf2
    Gene description
    double PHD fingers 2
    See related
    Ensembl:ENSCGRG00015014613
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Cricetulus griseus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Cricetidae; Cricetinae; Cricetulus
    Orthologs
    human mouse all
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    Genomic context

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    See Dpf2 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    104 current CriGri_1.0 (GCF_000223135.1) Unplaced Scaffold NW_003616698.1 (36419..51953, complement)
    104 current CriGri-PICRH-1.0 (GCF_003668045.3) 3 NC_048596.1 (53431779..53447319)

    NW_003616698.1Genomic Context describing neighboring genes Neighboring gene solute carrier family 25 member 45 Neighboring gene tigger transposable element derived 3 Neighboring gene U6 spliceosomal RNA Neighboring gene CDC42 effector protein 2 Neighboring gene DNA polymerase alpha 2, accessory subunit

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Unraveling the Chinese hamster ovary cell line transcriptome by next-generation sequencing. Becker J, et al. J Biotechnol, 2011 Dec 10. PMID 21945585
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in nervous system development IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of nBAF complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    zinc finger protein ubi-d4
    Names
    D4, zinc and double PHD fingers family 2
    Zinc finger protein ubi-d4

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Cricetulus griseus Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference CriGri_1.0 Primary Assembly

    Genomic

    1. NW_003616698.1 Reference CriGri_1.0 Primary Assembly

      Range
      36419..51953 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_003514539.5 → XP_003514587.1  zinc finger protein ubi-d4

      See identical proteins and their annotated locations for XP_003514587.1

      UniProtKB/TrEMBL
      A0A8C2MN04, G3IIW0
      Conserved Domains (3) summary
      cd15530
      Location:329 → 374
      PHD2_d4; PHD finger 2 found in d4 gene family proteins
      cd15691
      Location:272 → 327
      PHD1_DPF2_like; PHD finger 1 found in D4, zinc and double PHD fingers family 2 (DPF2)
      pfam14051
      Location:13 → 79
      Requiem_N; N-terminal domain of DPF2/REQ

    Alternate CriGri-PICRH-1.0

    Genomic

    1. NC_048596.1 Alternate CriGri-PICRH-1.0

      Range
      53431779..53447319
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_027408542.2 → XP_027264343.1  zinc finger protein ubi-d4

      UniProtKB/TrEMBL
      A0A8C2MN04, G3IIW0
      Related
      ENSCGRP00015019056.2, ENSCGRT00015023497.2
    Nucleotide Protein Strain
    Heading Accession and Version

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