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    Ddx3x DEAD-box helicase 3 X-linked [ Cricetulus griseus (Chinese hamster) ]

    Gene ID: 100764307, updated on 8-Mar-2024

    Summary

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    Gene symbol
    Ddx3x
    Gene description
    DEAD-box helicase 3 X-linked
    See related
    Ensembl:ENSCGRG00015003856
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Cricetulus griseus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Cricetidae; Cricetinae; Cricetulus
    Orthologs
    human mouse all
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    Genomic context

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    See Ddx3x in Genome Data Viewer
    Location:
    chromosome: X
    Exon count:
    17
    Annotation release Status Assembly Chr Location
    104 current CriGri_1.0 (GCF_000223135.1) Unplaced Scaffold NW_003613590.1 (3264802..3278481)
    104 current CriGri-PICRH-1.0 (GCF_003668045.3) X NC_048604.1 (118889800..118903589)

    NW_003613590.1Genomic Context describing neighboring genes Neighboring gene ubiquitin specific peptidase 9 X-linked Neighboring gene RING-box protein 1-like Neighboring gene uncharacterized LOC113837762 Neighboring gene uncharacterized LOC118239394

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Prediction of transcribed PIWI-interacting RNAs from CHO RNAseq data. Gerstl MP, et al. J Biotechnol, 2013 Jun 20. PMID 23639388
    2. Unraveling the Chinese hamster ovary cell line transcriptome by next-generation sequencing. Becker J, et al. J Biotechnol, 2011 Dec 10. PMID 21945585
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA helicase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cell differentiation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in gamete generation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in P granule IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ATP-dependent RNA helicase DDX3X
    Names
    DEAD (Asp-Glu-Ala-Asp) box helicase 3, X-linked
    DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3, X-linked

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Cricetulus griseus Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference CriGri_1.0 Primary Assembly

    Genomic

    1. NW_003613590.1 Reference CriGri_1.0 Primary Assembly

      Range
      3264802..3278481
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_003495366.4 → XP_003495414.1  ATP-dependent RNA helicase DDX3X isoform X1

      See identical proteins and their annotated locations for XP_003495414.1

      UniProtKB/TrEMBL
      A0A061HXV1, G3GSH5
      Conserved Domains (4) summary
      cd00268
      Location:182 → 404
      DEADc; DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif ...
      PTZ00110
      Location:57 → 580
      PTZ00110; helicase; Provisional
      pfam00271
      Location:426 → 536
      Helicase_C; Helicase conserved C-terminal domain
      pfam06273
      Location:80 → 172
      eIF-4B; Plant specific eukaryotic initiation factor 4B

    2. XM_007640272.4 → XP_007638462.1  ATP-dependent RNA helicase DDX3X isoform X2

      See identical proteins and their annotated locations for XP_007638462.1

      UniProtKB/TrEMBL
      A0A061HXV1, A0A9J7GLX5
      Conserved Domains (4) summary
      cd00268
      Location:181 → 403
      DEADc; DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif ...
      PTZ00110
      Location:56 → 579
      PTZ00110; helicase; Provisional
      pfam00271
      Location:425 → 535
      Helicase_C; Helicase conserved C-terminal domain
      pfam06273
      Location:79 → 171
      eIF-4B; Plant specific eukaryotic initiation factor 4B

    Alternate CriGri-PICRH-1.0

    Genomic

    1. NC_048604.1 Alternate CriGri-PICRH-1.0

      Range
      118889800..118903589
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_027433340.2 → XP_027289141.1  ATP-dependent RNA helicase DDX3X isoform X1

      UniProtKB/TrEMBL
      A0A061HXV1, G3GSH5
      Related
      ENSCGRP00015005054.2, ENSCGRT00015006247.2

    2. XM_027433341.2 → XP_027289142.1  ATP-dependent RNA helicase DDX3X isoform X2

      UniProtKB/TrEMBL
      A0A061HXV1, A0A9J7GLX5
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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