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    PDE11A phosphodiesterase 11A [ Sus scrofa (pig) ]

    Gene ID: 100738835, updated on 17-Aug-2024

    Summary

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    Official Symbol
    PDE11Aprovided by VGNC
    Official Full Name
    phosphodiesterase 11Aprovided by VGNC
    Primary source
    VGNC:VGNC:111762
    See related
    Ensembl:ENSSSCG00000038903
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Sus scrofa
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
    Expression
    Biased expression in ovary (RPKM 1.1) and kidney (RPKM 0.4) See more
    Orthologs
    human mouse all
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    Genomic context

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    See PDE11A in Genome Data Viewer
    Location:
    chromosome: 15
    Exon count:
    21
    Annotation release Status Assembly Chr Location
    106 current Sscrofa11.1 (GCF_000003025.6) 15 NC_010457.5 (83366082..83784266, complement)
    105 previous assembly Sscrofa10.2 (GCF_000003025.5) 15 NC_010457.4 (93138914..93295087, complement)

    Chromosome 15 - NC_010457.5Genomic Context describing neighboring genes Neighboring gene tetratricopeptide repeat protein 30B Neighboring gene tetratricopeptide repeat protein 30B-like Neighboring gene RNA binding motif protein 45 Neighboring gene oxysterol binding protein like 6

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
    • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
    • BioProject: PRJNA311523
    • Publication: PMID 27646534
    • Analysis date: Thu Dec 14 17:10:49 2017

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables 3',5'-cyclic-nucleotide phosphodiesterase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in signal transduction IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    dual 3',5'-cyclic-AMP and -GMP phosphodiesterase 11A

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Sscrofa11.1 Primary Assembly

    Genomic

    1. NC_010457.5 Reference Sscrofa11.1 Primary Assembly

      Range
      83366082..83784266 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021076417.1 → XP_020932076.1  dual 3',5'-cyclic-AMP and -GMP phosphodiesterase 11A isoform X2

      UniProtKB/TrEMBL
      A0A8D1EZX8
      Conserved Domains (2) summary
      smart00065
      Location:161 → 327
      GAF; Domain present in phytochromes and cGMP-specific phosphodiesterases
      pfam00233
      Location:422 → 654
      PDEase_I; 3'5'-cyclic nucleotide phosphodiesterase

    2. XM_021076416.1 → XP_020932075.1  dual 3',5'-cyclic-AMP and -GMP phosphodiesterase 11A isoform X1

      UniProtKB/TrEMBL
      A0A287AKY5, A0A4X1UHG3, A0A8D2BJQ7
      Related
      ENSSSCP00000044551.1, ENSSSCT00000063341.3
      Conserved Domains (2) summary
      smart00065
      Location:224 → 387
      GAF; Domain present in phytochromes and cGMP-specific phosphodiesterases
      pfam00233
      Location:670 → 902
      PDEase_I; 3'5'-cyclic nucleotide phosphodiesterase
    Nucleotide Protein
    Heading Accession and Version

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