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    CLPP caseinolytic mitochondrial matrix peptidase proteolytic subunit [ Sus scrofa (pig) ]

    Gene ID: 100737271, updated on 8-Mar-2024

    Summary

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    Official Symbol
    CLPPprovided by VGNC
    Official Full Name
    caseinolytic mitochondrial matrix peptidase proteolytic subunitprovided by VGNC
    Primary source
    VGNC:VGNC:86777
    See related
    Ensembl:ENSSSCG00000038079
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Sus scrofa
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
    Expression
    Ubiquitous expression in kidney (RPKM 25.6), ovary (RPKM 25.0) and 8 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See CLPP in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    106 current Sscrofa11.1 (GCF_000003025.6) 2 NC_010444.4 (72707363..72713481, complement)
    105 previous assembly Sscrofa10.2 (GCF_000003025.5) 2 NC_010444.3 (73220872..73226365, complement)

    Chromosome 2 - NC_010444.4Genomic Context describing neighboring genes Neighboring gene alkB homolog 7 Neighboring gene persephin Neighboring gene alkaline ceramidase 1 Neighboring gene uncharacterized LOC110259353 Neighboring gene MLLT1 super elongation complex subunit Neighboring gene acyl-CoA synthetase bubblegum family member 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome data used for gene annotation
    • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
    • BioProject: PRJNA311523
    • Publication: PMID 27646534
    • Analysis date: Thu Dec 14 17:10:49 2017

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP-dependent peptidase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATPase binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables serine-type endopeptidase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein quality control for misfolded or incompletely synthesized proteins IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of endopeptidase Clp complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ATP-dependent Clp protease proteolytic subunit, mitochondrial

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Sscrofa11.1 Primary Assembly

    Genomic

    1. NC_010444.4 Reference Sscrofa11.1 Primary Assembly

      Range
      72707363..72713481 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_003480818.4 → XP_003480866.3  ATP-dependent Clp protease proteolytic subunit, mitochondrial

      UniProtKB/TrEMBL
      A0A286ZRL1, A0A4X1VKX9, A0A8D0JXZ8
      Related
      ENSSSCP00000034106.1, ENSSSCT00000042643.2
      Conserved Domains (1) summary
      PRK00277
      Location:51 → 245
      clpP; ATP-dependent Clp protease proteolytic subunit; Reviewed
    Nucleotide Protein
    Heading Accession and Version

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