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    Bcl11a BCL11 transcription factor A [ Cavia porcellus (domestic guinea pig) ]

    Gene ID: 100734801, updated on 10-Oct-2024

    Summary

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    Gene symbol
    Bcl11a
    Gene description
    BCL11 transcription factor A
    See related
    Ensembl:ENSCPOG00000007587
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Cavia porcellus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Hystricomorpha; Caviidae; Cavia
    Orthologs
    human mouse all
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    Genomic context

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    See Bcl11a in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_02 current mCavPor4.1 (GCF_034190915.1) Unplaced Scaffold NW_026947501.1 (15562088..15658125, complement)
    103 previous assembly Cavpor3.0 (GCF_000151735.1) Unplaced Scaffold NT_176371.1 (4463433..4556780)

    NW_026947501.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC134471481 Neighboring gene uncharacterized LOC134471268 Neighboring gene uncharacterized LOC134471270 Neighboring gene uncharacterized LOC134471269 Neighboring gene uncharacterized LOC134471482

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in negative regulation of dendrite development IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    B-cell lymphoma/leukemia 11A
    Names
    B cell CLL/lymphoma 11A (zinc finger protein)
    BAF chromatin remodeling complex subunit BCL11A
    BCL11A, BAF complex component

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034190915.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference mCavPor4.1

    Genomic

    1. NW_026947501.1 Reference mCavPor4.1

      Range
      15562088..15658125 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_063229448.1 → XP_063085518.1  B-cell lymphoma/leukemia 11A isoform X5

    2. XM_063229452.1 → XP_063085522.1  B-cell lymphoma/leukemia 11A isoform X8

    3. XM_063229446.1 → XP_063085516.1  B-cell lymphoma/leukemia 11A isoform X3

    4. XM_063229451.1 → XP_063085521.1  B-cell lymphoma/leukemia 11A isoform X7

    5. XM_063229455.1 → XP_063085525.1  B-cell lymphoma/leukemia 11A isoform X11

    6. XM_063229454.1 → XP_063085524.1  B-cell lymphoma/leukemia 11A isoform X10

    7. XM_063229444.1 → XP_063085514.1  B-cell lymphoma/leukemia 11A isoform X1

    8. XM_063229445.1 → XP_063085515.1  B-cell lymphoma/leukemia 11A isoform X1

    9. XM_063229447.1 → XP_063085517.1  B-cell lymphoma/leukemia 11A isoform X4

    10. XM_063229442.1 → XP_063085512.1  B-cell lymphoma/leukemia 11A isoform X1

    11. XM_063229450.1 → XP_063085520.1  B-cell lymphoma/leukemia 11A isoform X6

    12. XM_063229449.1 → XP_063085519.1  B-cell lymphoma/leukemia 11A isoform X6

    13. XM_005002649.4 → XP_005002706.1  B-cell lymphoma/leukemia 11A isoform X2

      UniProtKB/TrEMBL
      A0A286XJ81
      Related
      ENSCPOP00000025545.1
      Conserved Domains (3) summary
      sd00017
      Location:742 → 762
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:741 → 762
      zf-C2H2; Zinc finger, C2H2 type
      pfam13465
      Location:754 → 779
      zf-H2C2_2; Zinc-finger double domain

    14. XM_063229453.1 → XP_063085523.1  B-cell lymphoma/leukemia 11A isoform X9

    Nucleotide Protein
    Heading Accession and Version

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