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    Ltbp1 latent transforming growth factor beta binding protein 1 [ Cavia porcellus (domestic guinea pig) ]

    Gene ID: 100733334, updated on 10-Oct-2024

    Summary

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    Gene symbol
    Ltbp1
    Gene description
    latent transforming growth factor beta binding protein 1
    See related
    Ensembl:ENSCPOG00000007011
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Cavia porcellus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Hystricomorpha; Caviidae; Cavia
    Orthologs
    human mouse all
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    Genomic context

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    See Ltbp1 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    34
    Annotation release Status Assembly Chr Location
    RS_2024_02 current mCavPor4.1 (GCF_034190915.1) Unplaced Scaffold NW_026947484.1 (228136508..228541774, complement)
    103 previous assembly Cavpor3.0 (GCF_000151735.1) Unplaced Scaffold NT_176401.1 (14573068..14798764)

    NW_026947484.1Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA SNORA2/SNORA34 family Neighboring gene RAS guanyl releasing protein 3 Neighboring gene family with sequence similarity 98 member A Neighboring gene U6 spliceosomal RNA Neighboring gene uncharacterized LOC134474570 Neighboring gene eukaryotic translation initiation factor 3 subunit F-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables calcium ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables transforming growth factor beta binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    latent-transforming growth factor beta-binding protein 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034190915.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference mCavPor4.1

    Genomic

    1. NW_026947484.1 Reference mCavPor4.1

      Range
      228136508..228541774 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_063230019.1 → XP_063086089.1  latent-transforming growth factor beta-binding protein 1 isoform X3

    2. XM_063230015.1 → XP_063086085.1  latent-transforming growth factor beta-binding protein 1 isoform X2

    3. XM_063230027.1 → XP_063086097.1  latent-transforming growth factor beta-binding protein 1 isoform X5

    4. XM_063230022.1 → XP_063086092.1  latent-transforming growth factor beta-binding protein 1 isoform X4

    5. XM_063230012.1 → XP_063086082.1  latent-transforming growth factor beta-binding protein 1 isoform X1

    6. XM_013155885.3 → XP_013011339.1  latent-transforming growth factor beta-binding protein 1 isoform X6

      UniProtKB/TrEMBL
      A0A286XIP9, H0V945
      Related
      ENSCPOP00000025289.1
      Conserved Domains (5) summary
      smart00179
      Location:876 → 917
      EGF_CA; Calcium-binding EGF-like domain
      cd00054
      Location:672 → 705
      EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
      pfam00683
      Location:363 → 398
      TB; TB domain
      pfam07645
      Location:589 → 629
      EGF_CA; Calcium-binding EGF domain
      pfam12662
      Location:570 → 592
      cEGF; Complement Clr-like EGF-like
    Nucleotide Protein
    Heading Accession and Version

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