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    Atp6v0d1 ATPase H+ transporting V0 subunit d1 [ Cavia porcellus (domestic guinea pig) ]

    Gene ID: 100733139, updated on 8-Mar-2024

    Summary

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    Gene symbol
    Atp6v0d1
    Gene description
    ATPase H+ transporting V0 subunit d1
    See related
    Ensembl:ENSCPOG00000010904
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Cavia porcellus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Hystricomorpha; Caviidae; Cavia
    Orthologs
    human mouse all
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    Genomic context

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    See Atp6v0d1 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_02 current mCavPor4.1 (GCF_034190915.1) Unplaced Scaffold NW_026947487.1 (99792359..99836478, complement)
    103 previous assembly Cavpor3.0 (GCF_000151735.1) Unplaced Scaffold NT_176397.1 (9125262..9169399)

    NW_026947487.1Genomic Context describing neighboring genes Neighboring gene zinc finger DHHC-type containing 1 Neighboring gene hydroxysteroid 11-beta dehydrogenase 2 Neighboring gene uncharacterized LOC106028123 Neighboring gene agouti related neuropeptide Neighboring gene RHO family interacting cell polarization regulator 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables proton-transporting ATPase activity, rotational mechanism IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in proton transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in vacuolar acidification IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in vacuolar transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in early endosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in lysosomal membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of plasma membrane proton-transporting V-type ATPase complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of proton-transporting V-type ATPase, V0 domain IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of vacuolar proton-transporting V-type ATPase complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    V-type proton ATPase subunit d 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034190915.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference mCavPor4.1

    Genomic

    1. NW_026947487.1 Reference mCavPor4.1

      Range
      99792359..99836478 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_013154864.3 → XP_013010318.1  V-type proton ATPase subunit d 1 isoform X1

      Conserved Domains (2) summary
      COG1527
      Location:14 → 365
      NtpC; Archaeal/vacuolar-type H+-ATPase subunit C/Vma6 [Energy production and conversion]
      pfam01992
      Location:16 → 360
      vATP-synt_AC39; ATP synthase (C/AC39) subunit

    2. XM_003472019.5 → XP_003472067.1  V-type proton ATPase subunit d 1 isoform X2

      See identical proteins and their annotated locations for XP_003472067.1

      UniProtKB/TrEMBL
      H0VHZ4
      Related
      ENSCPOP00000009797.2
      Conserved Domains (1) summary
      pfam01992
      Location:16 → 344
      vATP-synt_AC39; ATP synthase (C/AC39) subunit
    Nucleotide Protein
    Heading Accession and Version

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    Research Materials