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    Cpsf6 cleavage and polyadenylation specific factor 6 [ Cavia porcellus (domestic guinea pig) ]

    Gene ID: 100732506, updated on 8-Mar-2024

    Summary

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    Gene symbol
    Cpsf6
    Gene description
    cleavage and polyadenylation specific factor 6
    See related
    Ensembl:ENSCPOG00000015201
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Cavia porcellus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Hystricomorpha; Caviidae; Cavia
    Orthologs
    human mouse all
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    Genomic context

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    See Cpsf6 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    RS_2024_02 current mCavPor4.1 (GCF_034190915.1) Unplaced Scaffold NW_026947491.1 (61847248..61878188)
    103 previous assembly Cavpor3.0 (GCF_000151735.1) Unplaced Scaffold NT_176410.1 (29353049..29383869, complement)

    NW_026947491.1Genomic Context describing neighboring genes Neighboring gene adapter SH3BGRL-like Neighboring gene carboxypeptidase M Neighboring gene uncharacterized LOC134477174 Neighboring gene uncharacterized LOC106028978 Neighboring gene lysozyme C Neighboring gene lysozyme C-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables mRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in mRNA alternative polyadenylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of mRNA cleavage and polyadenylation specificity factor complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    cleavage and polyadenylation specificity factor subunit 6

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034190915.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference mCavPor4.1

    Genomic

    1. NW_026947491.1 Reference mCavPor4.1

      Range
      61847248..61878188
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005006369.4 → XP_005006426.1  cleavage and polyadenylation specificity factor subunit 6 isoform X1

      See identical proteins and their annotated locations for XP_005006426.1

      Conserved Domains (1) summary
      cd12643
      Location:82 → 158
      RRM_CFIm68; RNA recognition motif of pre-mRNA cleavage factor Im 68 kDa subunit (CFIm68 or CPSF6) and similar proteins

    2. XM_005006368.4 → XP_005006425.1  cleavage and polyadenylation specificity factor subunit 6 isoform X1

      See identical proteins and their annotated locations for XP_005006425.1

      Conserved Domains (1) summary
      cd12643
      Location:82 → 158
      RRM_CFIm68; RNA recognition motif of pre-mRNA cleavage factor Im 68 kDa subunit (CFIm68 or CPSF6) and similar proteins

    3. XM_003476097.5 → XP_003476145.1  cleavage and polyadenylation specificity factor subunit 6 isoform X2

      UniProtKB/TrEMBL
      H0VST5
      Related
      ENSCPOP00000032870.1
      Conserved Domains (1) summary
      cd12643
      Location:82 → 158
      RRM_CFIm68; RNA recognition motif of pre-mRNA cleavage factor Im 68 kDa subunit (CFIm68 or CPSF6) and similar proteins

    4. XM_005006370.4 → XP_005006427.1  cleavage and polyadenylation specificity factor subunit 6 isoform X3

      Conserved Domains (1) summary
      cd12643
      Location:82 → 158
      RRM_CFIm68; RNA recognition motif of pre-mRNA cleavage factor Im 68 kDa subunit (CFIm68 or CPSF6) and similar proteins

    5. XM_003476096.5 → XP_003476144.1  cleavage and polyadenylation specificity factor subunit 6 isoform X4

      See identical proteins and their annotated locations for XP_003476144.1

      UniProtKB/TrEMBL
      A0A286X951
      Related
      ENSCPOP00000021950.1
      Conserved Domains (1) summary
      cd12643
      Location:82 → 158
      RRM_CFIm68; RNA recognition motif of pre-mRNA cleavage factor Im 68 kDa subunit (CFIm68 or CPSF6) and similar proteins
    Nucleotide Protein
    Heading Accession and Version

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