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    Slbp stem-loop histone mRNA binding protein [ Cavia porcellus (domestic guinea pig) ]

    Gene ID: 100732116, updated on 8-Mar-2024

    Summary

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    Gene symbol
    Slbp
    Gene description
    stem-loop histone mRNA binding protein
    See related
    Ensembl:ENSCPOG00000000031
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Cavia porcellus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Hystricomorpha; Caviidae; Cavia
    Orthologs
    human mouse all
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    Genomic context

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    See Slbp in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_02 current mCavPor4.1 (GCF_034190915.1) Unplaced Scaffold NW_026947501.1 (73394175..73410534)
    103 previous assembly Cavpor3.0 (GCF_000151735.1) Unplaced Scaffold NT_176395.1 (29692..45562, complement)

    NW_026947501.1Genomic Context describing neighboring genes Neighboring gene fibroblast growth factor receptor 3 Neighboring gene transforming acidic coiled-coil containing protein 3 Neighboring gene transmembrane protein 129, E3 ubiquitin ligase Neighboring gene family with sequence similarity 53 member A Neighboring gene liprin-alpha-1-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables histone pre-mRNA stem-loop binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables mRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in mRNA 3'-end processing by stem-loop binding and cleavage IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in mRNA transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of histone pre-mRNA 3'end processing complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    histone RNA hairpin-binding protein
    Names
    stem-loop binding protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034190915.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference mCavPor4.1

    Genomic

    1. NW_026947501.1 Reference mCavPor4.1

      Range
      73394175..73410534
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_013154379.3 → XP_013009833.1  histone RNA hairpin-binding protein isoform X2

      Conserved Domains (2) summary
      pfam15247
      Location:84 → 151
      SLBP_RNA_bind; Histone RNA hairpin-binding protein RNA-binding domain
      pfam15297
      Location:6 → 56
      CKAP2_C; Cytoskeleton-associated protein 2 C-terminus

    2. XM_003471682.5 → XP_003471730.1  histone RNA hairpin-binding protein isoform X1

      UniProtKB/TrEMBL
      H0UT11
      Related
      ENSCPOP00000000027.3
      Conserved Domains (1) summary
      pfam15247
      Location:119 → 186
      SLBP_RNA_bind; Histone RNA hairpin-binding protein RNA-binding domain
    Nucleotide Protein
    Heading Accession and Version

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