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    LOC100731215 tubby-related protein 1 [ Cavia porcellus (domestic guinea pig) ]

    Gene ID: 100731215, updated on 29-Feb-2024

    Summary

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    Gene symbol
    LOC100731215
    Gene description
    tubby-related protein 1
    See related
    Ensembl:ENSCPOG00000005578 Ensembl:ENSCPOG00000022079
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Cavia porcellus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Hystricomorpha; Caviidae; Cavia
    Also known as
    Tead3; Tulp1
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    Genomic context

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    See LOC100731215 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    27
    Annotation release Status Assembly Chr Location
    RS_2024_02 current mCavPor4.1 (GCF_034190915.1) Unplaced Scaffold NW_026947511.1 (45711616..45739045)
    103 previous assembly Cavpor3.0 (GCF_000151735.1) Unplaced Scaffold NT_176404.1 (36729903..36747024)

    NW_026947511.1Genomic Context describing neighboring genes Neighboring gene FKBP prolyl isomerase 5 Neighboring gene ataxin-3-like Neighboring gene small nucleolar RNA SNORA2/SNORA34 family Neighboring gene ribosomal protein L10a Neighboring gene FA complementation group E

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables actin filament binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in embryonic organ development IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in hippo signaling IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein localization to cilium IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cilium IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of transcription regulator complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    tubby-related protein 1; uncharacterized protein LOC100731215
    Names
    TEA domain transcription factor 3
    TUB like protein 1
    tubby like protein 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034190915.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference mCavPor4.1

    Genomic

    1. NW_026947511.1 Reference mCavPor4.1

      Range
      45711616..45739045
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_013156841.3 → XP_013012295.2  uncharacterized protein LOC100731215 isoform X1

    2. XM_013156842.3 → XP_013012296.2  uncharacterized protein LOC100731215 isoform X2

    3. XM_063239002.1 → XP_063095072.1  tubby-related protein 1 isoform X3

    Nucleotide Protein
    Heading Accession and Version

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