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    Lsm10 LSM10, U7 small nuclear RNA associated [ Cavia porcellus (domestic guinea pig) ]

    Gene ID: 100730739, updated on 8-Mar-2024

    Summary

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    Gene symbol
    Lsm10
    Gene description
    LSM10, U7 small nuclear RNA associated
    See related
    Ensembl:ENSCPOG00000039302
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Cavia porcellus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Hystricomorpha; Caviidae; Cavia
    Orthologs
    human mouse all
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    Genomic context

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    See Lsm10 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_02 current mCavPor4.1 (GCF_034190915.1) Unplaced Scaffold NW_026947508.1 (28573076..28576237, complement)
    103 previous assembly Cavpor3.0 (GCF_000151735.1) Unplaced Scaffold NT_176394.1 (1176667..1179958)

    NW_026947508.1Genomic Context describing neighboring genes Neighboring gene eva-1 homolog B Neighboring gene serine/threonine kinase 40 Neighboring gene U6 spliceosomal RNA Neighboring gene organic solute carrier partner 1 Neighboring gene mitochondrial ribosomal protein S15 Neighboring gene colony stimulating factor 3 receptor

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables U7 snRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables histone pre-mRNA DCP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in mRNA 3'-end processing by stem-loop binding and cleavage IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of cytoplasmic U snRNP body IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nuclear body IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    U7 snRNA-associated Sm-like protein LSm10

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034190915.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference mCavPor4.1

    Genomic

    1. NW_026947508.1 Reference mCavPor4.1

      Range
      28573076..28576237 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005004209.4 → XP_005004266.1  U7 snRNA-associated Sm-like protein LSm10

      UniProtKB/TrEMBL
      A0A286XIA4
      Related
      ENSCPOP00000025200.1
      Conserved Domains (1) summary
      cd01733
      Location:8 → 85
      LSm10; Like-Sm protein 10

    2. XM_023565626.2 → XP_023421394.1  U7 snRNA-associated Sm-like protein LSm10

      UniProtKB/TrEMBL
      A0A286XIA4
      Conserved Domains (1) summary
      cd01733
      Location:8 → 85
      LSm10; Like-Sm protein 10

    3. XM_023565627.2 → XP_023421395.1  U7 snRNA-associated Sm-like protein LSm10

      UniProtKB/TrEMBL
      A0A286XIA4
      Conserved Domains (1) summary
      cd01733
      Location:8 → 85
      LSm10; Like-Sm protein 10
    Nucleotide Protein
    Heading Accession and Version

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