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    Slc13a3 solute carrier family 13 member 3 [ Cavia porcellus (domestic guinea pig) ]

    Gene ID: 100730446, updated on 10-Oct-2024

    Summary

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    Gene symbol
    Slc13a3
    Gene description
    solute carrier family 13 member 3
    See related
    Ensembl:ENSCPOG00000010649
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Cavia porcellus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Hystricomorpha; Caviidae; Cavia
    Orthologs
    human mouse all
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    Genomic context

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    See Slc13a3 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    RS_2024_02 current mCavPor4.1 (GCF_034190915.1) Unplaced Scaffold NW_026947488.1 (14955039..15048321)
    103 previous assembly Cavpor3.0 (GCF_000151735.1) Unplaced Scaffold NT_176374.1 (12961599..13036831, complement)

    NW_026947488.1Genomic Context describing neighboring genes Neighboring gene solute carrier family 2 member 10 Neighboring gene TP53 regulating kinase Neighboring gene osteoclast stimulatory transmembrane protein Neighboring gene U2 spliceosomal RNA

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables citrate transmembrane transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables sodium:dicarboxylate symporter activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables succinate transmembrane transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in citrate transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    Na(+)/dicarboxylate cotransporter 3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034190915.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference mCavPor4.1

    Genomic

    1. NW_026947488.1 Reference mCavPor4.1

      Range
      14955039..15048321
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_063248245.1 → XP_063104315.1  Na(+)/dicarboxylate cotransporter 3 isoform X5

    2. XM_063248244.1 → XP_063104314.1  Na(+)/dicarboxylate cotransporter 3 isoform X4

    3. XM_005002804.4 → XP_005002861.1  Na(+)/dicarboxylate cotransporter 3 isoform X1

      UniProtKB/TrEMBL
      H0VHD3
      Conserved Domains (2) summary
      COG0471
      Location:40 → 574
      CitT; Di- and tricarboxylate transporter [Carbohydrate transport and metabolism]
      cd01115
      Location:42 → 560
      SLC13_permease; Permease SLC13 (solute carrier 13). The sodium/dicarboxylate cotransporter NaDC-1 has been shown to translocate Krebs cycle intermediates such as succinate, citrate, and alpha-ketoglutarate across plasma membranes rabbit, human, and rat kidney. It is ...

    4. XM_005002805.4 → XP_005002862.1  Na(+)/dicarboxylate cotransporter 3 isoform X2

      UniProtKB/TrEMBL
      A0A286XJ19, H0VHD3
      Related
      ENSCPOP00000025485.1
      Conserved Domains (2) summary
      COG0471
      Location:40 → 573
      CitT; Di- and tricarboxylate transporter [Carbohydrate transport and metabolism]
      cd01115
      Location:42 → 559
      SLC13_permease; Permease SLC13 (solute carrier 13). The sodium/dicarboxylate cotransporter NaDC-1 has been shown to translocate Krebs cycle intermediates such as succinate, citrate, and alpha-ketoglutarate across plasma membranes rabbit, human, and rat kidney. It is ...

    5. XM_063248246.1 → XP_063104316.1  Na(+)/dicarboxylate cotransporter 3 isoform X6

    6. XM_023564242.2 → XP_023420010.2  Na(+)/dicarboxylate cotransporter 3 isoform X3

    7. XM_063248247.1 → XP_063104317.1  Na(+)/dicarboxylate cotransporter 3 isoform X7

    Nucleotide Protein
    Heading Accession and Version

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