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    Snrnp70 small nuclear ribonucleoprotein U1 subunit 70 [ Cavia porcellus (domestic guinea pig) ]

    Gene ID: 100729616, updated on 8-Mar-2024

    Summary

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    Gene symbol
    Snrnp70
    Gene description
    small nuclear ribonucleoprotein U1 subunit 70
    See related
    Ensembl:ENSCPOG00000019589
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Cavia porcellus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Hystricomorpha; Caviidae; Cavia
    Orthologs
    human mouse all
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    Genomic context

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    See Snrnp70 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_02 current mCavPor4.1 (GCF_034190915.1) Unplaced Scaffold NW_026947490.1 (27670336..27686283)
    103 previous assembly Cavpor3.0 (GCF_000151735.1) Unplaced Scaffold NT_176349.1 (8266251..8282289, complement)

    NW_026947490.1Genomic Context describing neighboring genes Neighboring gene neurotrophin 4 Neighboring gene potassium voltage-gated channel subfamily A member 7 Neighboring gene lin-7 homolog B, crumbs cell polarity complex component Neighboring gene PTPRF interacting protein alpha 3

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables U1 snRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables mRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in mRNA splicing, via spliceosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of U1 snRNP IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of U2-type prespliceosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of precatalytic spliceosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    U1 small nuclear ribonucleoprotein 70 kDa

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034190915.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference mCavPor4.1

    Genomic

    1. NW_026947490.1 Reference mCavPor4.1

      Range
      27670336..27686283
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005001772.4 → XP_005001829.1  U1 small nuclear ribonucleoprotein 70 kDa isoform X2

      Conserved Domains (3) summary
      COG0724
      Location:26 → 182
      RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
      cd12236
      Location:102 → 187
      RRM_snRNP70; RNA recognition motif in U1 small nuclear ribonucleoprotein 70 kDa (U1-70K) and similar proteins
      pfam12220
      Location:2 → 93
      U1snRNP70_N; U1 small nuclear ribonucleoprotein of 70kDa MW N terminal

    2. XM_003465522.5 → XP_003465570.1  U1 small nuclear ribonucleoprotein 70 kDa isoform X1

      UniProtKB/TrEMBL
      H0W1R5
      Related
      ENSCPOP00000016905.1
      Conserved Domains (3) summary
      COG0724
      Location:26 → 182
      RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
      cd12236
      Location:102 → 187
      RRM_snRNP70; RNA recognition motif in U1 small nuclear ribonucleoprotein 70 kDa (U1-70K) and similar proteins
      pfam12220
      Location:2 → 93
      U1snRNP70_N; U1 small nuclear ribonucleoprotein of 70kDa MW N terminal
    Nucleotide Protein
    Heading Accession and Version

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