U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    Ralgps1 Ral GEF with PH domain and SH3 binding motif 1 [ Cavia porcellus (domestic guinea pig) ]

    Gene ID: 100728710, updated on 10-Oct-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    Ralgps1
    Gene description
    Ral GEF with PH domain and SH3 binding motif 1
    See related
    Ensembl:ENSCPOG00000012308
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Cavia porcellus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Hystricomorpha; Caviidae; Cavia
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See Ralgps1 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    27
    Annotation release Status Assembly Chr Location
    RS_2024_02 current mCavPor4.1 (GCF_034190915.1) Unplaced Scaffold NW_026947484.1 (201198490..201464503)
    103 previous assembly Cavpor3.0 (GCF_000151735.1) Unplaced Scaffold NT_176392.1 (7235100..7501096, complement)

    NW_026947484.1Genomic Context describing neighboring genes Neighboring gene zinc finger and BTB domain containing 34 Neighboring gene uncharacterized LOC134470929 Neighboring gene angiopoietin like 2 Neighboring gene GTPase activating Rap/RanGAP domain like 3 Neighboring gene small nucleolar RNA SNORA44 Neighboring gene solute carrier family 2 member 8

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables guanyl-nucleotide exchange factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in Ras protein signal transduction IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of GTPase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    ras-specific guanine nucleotide-releasing factor RalGPS1

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: GCF_034190915.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference mCavPor4.1

    Genomic

    1. NW_026947484.1 Reference mCavPor4.1

      Range
      201198490..201464503
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_063227834.1 → XP_063083904.1  ras-specific guanine nucleotide-releasing factor RalGPS1 isoform X1

    2. XM_063227863.1 → XP_063083933.1  ras-specific guanine nucleotide-releasing factor RalGPS1 isoform X2

    3. XM_063227922.1 → XP_063083992.1  ras-specific guanine nucleotide-releasing factor RalGPS1 isoform X9

    4. XM_063227927.1 → XP_063083997.1  ras-specific guanine nucleotide-releasing factor RalGPS1 isoform X10

    5. XM_003470764.5 → XP_003470812.1  ras-specific guanine nucleotide-releasing factor RalGPS1 isoform X4

      UniProtKB/TrEMBL
      A0A286XX73, A0A286Y599
      Related
      ENSCPOP00000029932.1
      Conserved Domains (2) summary
      smart00147
      Location:46 → 288
      RasGEF; Guanine nucleotide exchange factor for Ras-like small GTPases
      cd13310
      Location:460 → 575
      PH_RalGPS1_2; Ral GEF with PH domain and SH3 binding motif 1 and 2 Pleckstrin homology (PH) domain

    6. XM_063227884.1 → XP_063083954.1  ras-specific guanine nucleotide-releasing factor RalGPS1 isoform X5

    7. XM_005004026.4 → XP_005004083.1  ras-specific guanine nucleotide-releasing factor RalGPS1 isoform X11

      UniProtKB/TrEMBL
      A0A286XRF5, H0VL52
      Related
      ENSCPOP00000027856.1
      Conserved Domains (3) summary
      smart00147
      Location:46 → 288
      RasGEF; Guanine nucleotide exchange factor for Ras-like small GTPases
      cd13310
      Location:391 → 506
      PH_RalGPS1_2; Ral GEF with PH domain and SH3 binding motif 1 and 2 Pleckstrin homology (PH) domain
      pfam00169
      Location:390 → 501
      PH; PH domain

    8. XM_013153332.3 → XP_013008786.2  ras-specific guanine nucleotide-releasing factor RalGPS1 isoform X12

      UniProtKB/TrEMBL
      H0VL52
      Conserved Domains (2) summary
      smart00147
      Location:46 → 288
      RasGEF; Guanine nucleotide exchange factor for Ras-like small GTPases
      cd13310
      Location:390 → 505
      PH_RalGPS1_2; Ral GEF with PH domain and SH3 binding motif 1 and 2 Pleckstrin homology (PH) domain

    9. XM_063227895.1 → XP_063083965.1  ras-specific guanine nucleotide-releasing factor RalGPS1 isoform X6

    10. XM_063227866.1 → XP_063083936.1  ras-specific guanine nucleotide-releasing factor RalGPS1 isoform X3

    11. XM_023565464.2 → XP_023421232.1  ras-specific guanine nucleotide-releasing factor RalGPS1 isoform X13

      UniProtKB/TrEMBL
      A0A286XFM9, H0VL52
      Related
      ENSCPOP00000024229.1
      Conserved Domains (2) summary
      smart00147
      Location:38 → 271
      RasGEF; Guanine nucleotide exchange factor for Ras-like small GTPases
      cd13310
      Location:373 → 488
      PH_RalGPS1_2; Ral GEF with PH domain and SH3 binding motif 1 and 2 Pleckstrin homology (PH) domain

    12. XM_063227906.1 → XP_063083976.1  ras-specific guanine nucleotide-releasing factor RalGPS1 isoform X7

    13. XM_063227847.1 → XP_063083917.1  ras-specific guanine nucleotide-releasing factor RalGPS1 isoform X1

    14. XM_063227858.1 → XP_063083928.1  ras-specific guanine nucleotide-releasing factor RalGPS1 isoform X1

    15. XM_063227853.1 → XP_063083923.1  ras-specific guanine nucleotide-releasing factor RalGPS1 isoform X1

    16. XM_063227836.1 → XP_063083906.1  ras-specific guanine nucleotide-releasing factor RalGPS1 isoform X1

    17. XM_063227842.1 → XP_063083912.1  ras-specific guanine nucleotide-releasing factor RalGPS1 isoform X1

    18. XM_063227917.1 → XP_063083987.1  ras-specific guanine nucleotide-releasing factor RalGPS1 isoform X8

    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials