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    Gdpd5 glycerophosphodiester phosphodiesterase domain containing 5 [ Cavia porcellus (domestic guinea pig) ]

    Gene ID: 100728386, updated on 8-Mar-2024

    Summary

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    Gene symbol
    Gdpd5
    Gene description
    glycerophosphodiester phosphodiesterase domain containing 5
    See related
    Ensembl:ENSCPOG00000010246
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Cavia porcellus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Hystricomorpha; Caviidae; Cavia
    Orthologs
    human mouse all
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    Genomic context

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    See Gdpd5 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    19
    Annotation release Status Assembly Chr Location
    RS_2024_02 current mCavPor4.1 (GCF_034190915.1) Unplaced Scaffold NW_026947492.1 (59853297..59949032)
    103 previous assembly Cavpor3.0 (GCF_000151735.1) Unplaced Scaffold NT_176316.1 (149725..245426)

    NW_026947492.1Genomic Context describing neighboring genes Neighboring gene microtubule associated protein 6 Neighboring gene serpin family H member 1 Neighboring gene uncharacterized LOC134477693 Neighboring gene U6atac minor spliceosomal RNA Neighboring gene kelch like family member 35 Neighboring gene small nucleolar RNA SNORD15 Neighboring gene ribosomal protein S3

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables glycerophosphodiester phosphodiesterase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in lipid metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of neuron differentiation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    glycerophosphodiester phosphodiesterase domain-containing protein 5

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034190915.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference mCavPor4.1

    Genomic

    1. NW_026947492.1 Reference mCavPor4.1

      Range
      59853297..59949032
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_063256484.1 → XP_063112554.1  glycerophosphodiester phosphodiesterase domain-containing protein 5 isoform X1

    2. XM_063256483.1 → XP_063112553.1  glycerophosphodiester phosphodiesterase domain-containing protein 5 isoform X1

    3. XM_005000720.4 → XP_005000777.1  glycerophosphodiester phosphodiesterase domain-containing protein 5 isoform X2

      UniProtKB/TrEMBL
      H0VGG1
      Related
      ENSCPOP00000029098.1
      Conserved Domains (1) summary
      cl14615
      Location:227 → 576
      PI-PLCc_GDPD_SF; Catalytic domain of phosphoinositide-specific phospholipase C-like phosphodiesterases superfamily

    4. XM_063256485.1 → XP_063112555.1  glycerophosphodiester phosphodiesterase domain-containing protein 5 isoform X1

    5. XM_063256486.1 → XP_063112556.1  glycerophosphodiester phosphodiesterase domain-containing protein 5 isoform X3

    Nucleotide Protein
    Heading Accession and Version

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    Research Materials