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    LOC100728385 tRNA (guanine(10)-N2)-methyltransferase homolog [ Cavia porcellus (domestic guinea pig) ]

    Gene ID: 100728385, updated on 29-Feb-2024

    Summary

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    Gene symbol
    LOC100728385
    Gene description
    tRNA (guanine(10)-N2)-methyltransferase homolog
    See related
    Ensembl:ENSCPOG00000009124 Ensembl:ENSCPOG00000021856
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Cavia porcellus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Hystricomorpha; Caviidae; Cavia
    Also known as
    Hint3; Trmt11
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    Genomic context

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    See LOC100728385 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    18
    Annotation release Status Assembly Chr Location
    RS_2024_02 current mCavPor4.1 (GCF_034190915.1) Unplaced Scaffold NW_026947507.1 (51175110..51239544)
    103 previous assembly Cavpor3.0 (GCF_000151735.1) Unplaced Scaffold NT_176418.1 (74670569..74714844)

    NW_026947507.1Genomic Context describing neighboring genes Neighboring gene hes related family bHLH transcription factor with YRPW motif 2 Neighboring gene uncharacterized LOC134472764 Neighboring gene nuclear receptor coactivator 7 Neighboring gene U2 spliceosomal RNA Neighboring gene centromere protein W

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables methyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables nucleic acid binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in methylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    tRNA (guanine(10)-N2)-methyltransferase homolog
    Names
    histidine triad nucleotide binding protein 3
    tRNA guanosine-2'-O-methyltransferase TRM11 homolog
    tRNA methyltransferase 11 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034190915.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference mCavPor4.1

    Genomic

    1. NW_026947507.1 Reference mCavPor4.1

      Range
      51175110..51239544
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_063235050.1 → XP_063091120.1  tRNA (guanine(10)-N2)-methyltransferase homolog isoform X2

    2. XM_063235049.1 → XP_063091119.1  tRNA (guanine(10)-N2)-methyltransferase homolog isoform X1

    3. XM_063235051.1 → XP_063091121.1  tRNA (guanine(10)-N2)-methyltransferase homolog isoform X5

    4. XM_013143468.3 → XP_012998922.1  tRNA (guanine(10)-N2)-methyltransferase homolog isoform X3

      UniProtKB/TrEMBL
      H0VDW8
      Related
      ENSCPOP00000008193.2
      Conserved Domains (2) summary
      COG1041
      Location:9 → 413
      Trm11; tRNA G10 N-methylase Trm11 [Translation, ribosomal structure and biogenesis]
      cl17173
      Location:190 → 321
      AdoMet_MTases; S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). ...

    5. XM_063235052.1 → XP_063091122.1  tRNA (guanine(10)-N2)-methyltransferase homolog isoform X6

    6. XM_013143469.3 → XP_012998923.1  tRNA (guanine(10)-N2)-methyltransferase homolog isoform X4

      Conserved Domains (2) summary
      COG1041
      Location:3 → 391
      Trm11; tRNA G10 N-methylase Trm11 [Translation, ribosomal structure and biogenesis]
      cl17173
      Location:168 → 299
      AdoMet_MTases; S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). ...
    Nucleotide Protein
    Heading Accession and Version

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