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    Sox18 SRY-box transcription factor 18 [ Cavia porcellus (domestic guinea pig) ]

    Gene ID: 100727175, updated on 8-Mar-2024

    Summary

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    Gene symbol
    Sox18
    Gene description
    SRY-box transcription factor 18
    See related
    Ensembl:ENSCPOG00000037293
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Cavia porcellus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Hystricomorpha; Caviidae; Cavia
    Orthologs
    human mouse all
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    Genomic context

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    See Sox18 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_02 current mCavPor4.1 (GCF_034190915.1) Unplaced Scaffold NW_026947488.1 (703434..705230)
    103 previous assembly Cavpor3.0 (GCF_000151735.1) Unplaced Scaffold NT_176300.1 (321932..323717)

    NW_026947488.1Genomic Context describing neighboring genes Neighboring gene transcription elongation factor A2 Neighboring gene uncharacterized LOC106025978 Neighboring gene chromosome unknown C20orf204 homolog Neighboring gene pre-mRNA processing factor 6

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in angiogenesis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in lymphangiogenesis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in vasculogenesis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    transcription factor SOX-18
    Names
    SRY-box 18

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034190915.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference mCavPor4.1

    Genomic

    1. NW_026947488.1 Reference mCavPor4.1

      Range
      703434..705230
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_003462782.5 → XP_003462830.1  transcription factor SOX-18

      UniProtKB/TrEMBL
      A0A286XRE9
      Related
      ENSCPOP00000027944.1
      Conserved Domains (2) summary
      cd01388
      Location:78 → 149
      SOX-TCF_HMG-box; SOX-TCF_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and ...
      pfam12067
      Location:184 → 373
      Sox_C_TAD; Sox C-terminal transactivation domain
    Nucleotide Protein
    Heading Accession and Version

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    Molecular Biology Databases
    Research Materials