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    Ddx31 DEAD-box helicase 31 [ Cavia porcellus (domestic guinea pig) ]

    Gene ID: 100726561, updated on 8-Mar-2024

    Summary

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    Gene symbol
    Ddx31
    Gene description
    DEAD-box helicase 31
    See related
    Ensembl:ENSCPOG00000014243
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Cavia porcellus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Hystricomorpha; Caviidae; Cavia
    Orthologs
    human mouse all
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    Genomic context

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    See Ddx31 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    24
    Annotation release Status Assembly Chr Location
    RS_2024_02 current mCavPor4.1 (GCF_034190915.1) Unplaced Scaffold NW_026947532.1 (3109105..3172984)
    103 previous assembly Cavpor3.0 (GCF_000151735.1) Unplaced Scaffold NT_176392.1 (1129290..1195459)

    NW_026947532.1Genomic Context describing neighboring genes Neighboring gene adenylate kinase 8 Neighboring gene general transcription factor IIIC subunit 4 Neighboring gene BarH like homeobox 1 Neighboring gene cilia and flagella associated protein 77

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA helicase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables nucleic acid binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in ribosome biogenesis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    probable ATP-dependent RNA helicase DDX31

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034190915.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference mCavPor4.1

    Genomic

    1. NW_026947532.1 Reference mCavPor4.1

      Range
      3109105..3172984
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_063244164.1 → XP_063100234.1  probable ATP-dependent RNA helicase DDX31 isoform X4

    2. XM_063244163.1 → XP_063100233.1  probable ATP-dependent RNA helicase DDX31 isoform X3

    3. XM_063244162.1 → XP_063100232.1  probable ATP-dependent RNA helicase DDX31 isoform X1

    4. XM_063244165.1 → XP_063100235.1  probable ATP-dependent RNA helicase DDX31 isoform X5

    5. XM_003470922.5 → XP_003470970.2  probable ATP-dependent RNA helicase DDX31 isoform X2

      UniProtKB/TrEMBL
      H0VQK7
      Related
      ENSCPOP00000012833.3
      Conserved Domains (4) summary
      COG0513
      Location:117 → 658
      SrmB; Superfamily II DNA and RNA helicase [Replication, recombination and repair]
      cd00079
      Location:372 → 520
      HELICc; Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may ...
      cd00268
      Location:121 → 333
      DEADc; DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif ...
      pfam13959
      Location:582 → 643
      DUF4217; Domain of unknown function (DUF4217)

    RNA

    1. XR_010045963.1 RNA Sequence

    2. XR_010045960.1 RNA Sequence

    3. XR_010045962.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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    Research Materials