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    Chordc1 cysteine and histidine rich domain containing 1 [ Cavia porcellus (domestic guinea pig) ]

    Gene ID: 100726003, updated on 8-Mar-2024

    Summary

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    Gene symbol
    Chordc1
    Gene description
    cysteine and histidine rich domain containing 1
    See related
    Ensembl:ENSCPOG00000022614
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Cavia porcellus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Hystricomorpha; Caviidae; Cavia
    Orthologs
    human mouse all
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    Genomic context

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    See Chordc1 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2024_02 current mCavPor4.1 (GCF_034190915.1) Unplaced Scaffold NW_026947492.1 (44725769..44749455)
    103 previous assembly Cavpor3.0 (GCF_000151735.1) Unplaced Scaffold NT_176379.1 (4421537..4440022)

    NW_026947492.1Genomic Context describing neighboring genes Neighboring gene U1 spliceosomal RNA Neighboring gene uncharacterized LOC134477671 Neighboring gene N-acetylated alpha-linked acidic dipeptidase 2 Neighboring gene ran-specific GTPase-activating protein-like Neighboring gene U6 spliceosomal RNA Neighboring gene upstream-binding factor 1-like protein 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in centrosome duplication IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    cysteine and histidine-rich domain-containing protein 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034190915.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference mCavPor4.1

    Genomic

    1. NW_026947492.1 Reference mCavPor4.1

      Range
      44725769..44749455
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_003468572.5 → XP_003468620.1  cysteine and histidine-rich domain-containing protein 1

      UniProtKB/TrEMBL
      A0A286XUR5
      Related
      ENSCPOP00000029071.1
      Conserved Domains (2) summary
      cd06488
      Location:230 → 316
      p23_melusin_like; p23_like domain similar to the C-terminal (tail) domain of vertebrate Melusin and related proteins. Melusin's tail domain interacts with the cytoplasmic domain of beta1-A and beta1-D isoforms of beta1 integrin, it does not bind other integrin beta ...
      pfam04968
      Location:3 → 64
      CHORD; CHORD
    Nucleotide Protein
    Heading Accession and Version

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