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    Trim32 tripartite motif containing 32 [ Cavia porcellus (domestic guinea pig) ]

    Gene ID: 100725075, updated on 8-Mar-2024

    Summary

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    Gene symbol
    Trim32
    Gene description
    tripartite motif containing 32
    See related
    Ensembl:ENSCPOG00000038367
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Cavia porcellus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Hystricomorpha; Caviidae; Cavia
    Orthologs
    human mouse all
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    Genomic context

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    See Trim32 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_02 current mCavPor4.1 (GCF_034190915.1) Unplaced Scaffold NW_026947484.1 (171469927..171481950, complement)
    103 previous assembly Cavpor3.0 (GCF_000151735.1) Unplaced Scaffold NT_176417.1 (75685870..75700936, complement)

    NW_026947484.1Genomic Context describing neighboring genes Neighboring gene astrotactin 2 Neighboring gene uncharacterized LOC134478520 Neighboring gene uncharacterized LOC134478528 Neighboring gene ubiquitin-conjugating enzyme E2 E1-like Neighboring gene pappalysin 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ubiquitin protein ligase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in positive regulation of NF-kappaB transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein K48-linked ubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    E3 ubiquitin-protein ligase TRIM32

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034190915.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference mCavPor4.1

    Genomic

    1. NW_026947484.1 Reference mCavPor4.1

      Range
      171469927..171481950 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005007956.4 → XP_005008013.1  E3 ubiquitin-protein ligase TRIM32

      See identical proteins and their annotated locations for XP_005008013.1

      UniProtKB/TrEMBL
      A0A286XTK2
      Conserved Domains (3) summary
      smart00336
      Location:98 → 138
      BBOX; B-Box-type zinc finger
      cd14961
      Location:362 → 644
      NHL_TRIM32_like; NHL repeat domain of the tripartite motif-containing protein 32 (TRIM32) and related proteins
      pfam13445
      Location:20 → 62
      zf-RING_UBOX; RING-type zinc-finger

    2. XM_005007957.4 → XP_005008014.1  E3 ubiquitin-protein ligase TRIM32

      See identical proteins and their annotated locations for XP_005008014.1

      UniProtKB/TrEMBL
      A0A286XTK2
      Conserved Domains (3) summary
      smart00336
      Location:98 → 138
      BBOX; B-Box-type zinc finger
      cd14961
      Location:362 → 644
      NHL_TRIM32_like; NHL repeat domain of the tripartite motif-containing protein 32 (TRIM32) and related proteins
      pfam13445
      Location:20 → 62
      zf-RING_UBOX; RING-type zinc-finger

    3. XM_005007959.4 → XP_005008016.1  E3 ubiquitin-protein ligase TRIM32

      See identical proteins and their annotated locations for XP_005008016.1

      UniProtKB/TrEMBL
      A0A286XTK2
      Conserved Domains (3) summary
      smart00336
      Location:98 → 138
      BBOX; B-Box-type zinc finger
      cd14961
      Location:362 → 644
      NHL_TRIM32_like; NHL repeat domain of the tripartite motif-containing protein 32 (TRIM32) and related proteins
      pfam13445
      Location:20 → 62
      zf-RING_UBOX; RING-type zinc-finger

    4. XM_005007958.4 → XP_005008015.1  E3 ubiquitin-protein ligase TRIM32

      See identical proteins and their annotated locations for XP_005008015.1

      UniProtKB/TrEMBL
      A0A286XTK2
      Related
      ENSCPOP00000028854.1
      Conserved Domains (3) summary
      smart00336
      Location:98 → 138
      BBOX; B-Box-type zinc finger
      cd14961
      Location:362 → 644
      NHL_TRIM32_like; NHL repeat domain of the tripartite motif-containing protein 32 (TRIM32) and related proteins
      pfam13445
      Location:20 → 62
      zf-RING_UBOX; RING-type zinc-finger
    Nucleotide Protein
    Heading Accession and Version

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