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    Polr3a RNA polymerase III subunit A [ Cavia porcellus (domestic guinea pig) ]

    Gene ID: 100724395, updated on 8-Mar-2024

    Summary

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    Gene symbol
    Polr3a
    Gene description
    RNA polymerase III subunit A
    See related
    Ensembl:ENSCPOG00000022387
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Cavia porcellus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Hystricomorpha; Caviidae; Cavia
    Orthologs
    human mouse all
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    Genomic context

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    See Polr3a in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    31
    Annotation release Status Assembly Chr Location
    RS_2024_02 current mCavPor4.1 (GCF_034190915.1) Unplaced Scaffold NW_026947511.1 (35143862..35182434, complement)
    103 previous assembly Cavpor3.0 (GCF_000151735.1) Unplaced Scaffold NT_176404.1 (26167183..26205147, complement)

    NW_026947511.1Genomic Context describing neighboring genes Neighboring gene potassium calcium-activated channel subfamily M alpha 1 Neighboring gene discs large MAGUK scaffold protein 5 Neighboring gene uncharacterized LOC106028472 Neighboring gene ribosomal protein S24

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase III activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of RNA polymerase III complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    DNA-directed RNA polymerase III subunit RPC1
    Names
    polymerase (RNA) III (DNA directed) polypeptide A, 155kDa

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034190915.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference mCavPor4.1

    Genomic

    1. NW_026947511.1 Reference mCavPor4.1

      Range
      35143862..35182434 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_003473812.5 → XP_003473860.1  DNA-directed RNA polymerase III subunit RPC1

      UniProtKB/TrEMBL
      A0A286XD18, H0VUQ5
      Related
      ENSCPOP00000014430.1
      Conserved Domains (4) summary
      cd02736
      Location:1021 → 1360
      RNAP_III_Rpc1_C; Largest subunit (Rpc1) of Eukaryotic RNA polymerase III (RNAP III), C-terminal domain
      PRK08566
      Location:7 → 932
      PRK08566; DNA-directed RNA polymerase subunit A'; Validated
      cd02583
      Location:24 → 891
      RNAP_III_RPC1_N; Largest subunit (RPC1) of eukaryotic RNA polymerase III (RNAP III), N-terminal domain
      pfam04998
      Location:841 → 1317
      RNA_pol_Rpb1_5; RNA polymerase Rpb1, domain 5
    Nucleotide Protein
    Heading Accession and Version

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