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    Kdm8 lysine demethylase 8 [ Cavia porcellus (domestic guinea pig) ]

    Gene ID: 100723684, updated on 8-Mar-2024

    Summary

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    Gene symbol
    Kdm8
    Gene description
    lysine demethylase 8
    See related
    Ensembl:ENSCPOG00000002282
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Cavia porcellus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Hystricomorpha; Caviidae; Cavia
    Orthologs
    human mouse all
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    Genomic context

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    See Kdm8 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_02 current mCavPor4.1 (GCF_034190915.1) Unplaced Scaffold NW_026947499.1 (54785878..54805383)
    103 previous assembly Cavpor3.0 (GCF_000151735.1) Unplaced Scaffold NT_176415.1 (43526081..43545574)

    NW_026947499.1Genomic Context describing neighboring genes Neighboring gene heparan sulfate-glucosamine 3-sulfotransferase 4 Neighboring gene chromosome unknown C16orf82 homolog Neighboring gene NSE1 homolog, SMC5-SMC6 complex component Neighboring gene interleukin 4 receptor

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables histone H3K36 demethylase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    bifunctional peptidase and arginyl-hydroxylase JMJD5

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034190915.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference mCavPor4.1

    Genomic

    1. NW_026947499.1 Reference mCavPor4.1

      Range
      54785878..54805383
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_063226701.1 → XP_063082771.1  bifunctional peptidase and arginyl-hydroxylase JMJD5 isoform X2

    2. XM_003477825.5 → XP_003477873.1  bifunctional peptidase and arginyl-hydroxylase JMJD5 isoform X1

      See identical proteins and their annotated locations for XP_003477873.1

      UniProtKB/TrEMBL
      H0UY71
      Related
      ENSCPOP00000002073.3
      Conserved Domains (1) summary
      pfam13621
      Location:195 → 416
      Cupin_8; Cupin-like domain

    3. XM_013141951.2 → XP_012997405.1  bifunctional peptidase and arginyl-hydroxylase JMJD5 isoform X1

      See identical proteins and their annotated locations for XP_012997405.1

      UniProtKB/TrEMBL
      H0UY71
      Conserved Domains (1) summary
      pfam13621
      Location:195 → 416
      Cupin_8; Cupin-like domain
    Nucleotide Protein
    Heading Accession and Version

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