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    Cabp4 calcium binding protein 4 [ Cavia porcellus (domestic guinea pig) ]

    Gene ID: 100722978, updated on 8-Mar-2024

    Summary

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    Gene symbol
    Cabp4
    Gene description
    calcium binding protein 4
    See related
    Ensembl:ENSCPOG00000038418
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Cavia porcellus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Hystricomorpha; Caviidae; Cavia
    Orthologs
    human all
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    Genomic context

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    See Cabp4 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_02 current mCavPor4.1 (GCF_034190915.1) Unplaced Scaffold NW_026947500.1 (25977266..25994567)
    103 previous assembly Cavpor3.0 (GCF_000151735.1) Unplaced Scaffold NT_176377.1 (7923508..7927833)

    NW_026947500.1Genomic Context describing neighboring genes Neighboring gene ribosomal protein S6 kinase B2 Neighboring gene protein tyrosine phosphatase receptor type C associated protein Neighboring gene coronin 1B Neighboring gene G protein-coupled receptor 152 Neighboring gene transmembrane protein 134 Neighboring gene uncharacterized LOC134470898 Neighboring gene aryl hydrocarbon receptor interacting protein Neighboring gene phosphatidylinositol transfer protein membrane associated 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables calcium channel regulator activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables calcium ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of voltage-gated calcium channel activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in visual perception IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    calcium-binding protein 4

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034190915.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference mCavPor4.1

    Genomic

    1. NW_026947500.1 Reference mCavPor4.1

      Range
      25977266..25994567
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_063227625.1 → XP_063083695.1  calcium-binding protein 4 isoform X2

    2. XM_003468294.4 → XP_003468342.1  calcium-binding protein 4 isoform X1

      UniProtKB/TrEMBL
      A0A286XRV0
      Related
      ENSCPOP00000028239.1
      Conserved Domains (2) summary
      cd00051
      Location:206 → 269
      EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...
      pfam13499
      Location:131 → 190
      EF-hand_7; EF-hand domain pair
    Nucleotide Protein
    Heading Accession and Version

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    Research Materials