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    Emg1 EMG1 N1-specific pseudouridine methyltransferase [ Cavia porcellus (domestic guinea pig) ]

    Gene ID: 100722865, updated on 8-Mar-2024

    Summary

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    Gene symbol
    Emg1
    Gene description
    EMG1 N1-specific pseudouridine methyltransferase
    See related
    Ensembl:ENSCPOG00000025388
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Cavia porcellus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Hystricomorpha; Caviidae; Cavia
    Orthologs
    human mouse all
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    Genomic context

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    See Emg1 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_02 current mCavPor4.1 (GCF_034190915.1) Unplaced Scaffold NW_026947510.1 (377149..384227, complement)
    103 previous assembly Cavpor3.0 (GCF_000151735.1) Unplaced Scaffold NT_176312.1 (295928..303018, complement)

    NW_026947510.1Genomic Context describing neighboring genes Neighboring gene complement C1s Neighboring gene uncharacterized LOC134473456 Neighboring gene lysophosphatidylcholine acyltransferase 3 Neighboring gene small nucleolar RNA U89 Neighboring gene uncharacterized LOC106026089 Neighboring gene prohibitin 2 Neighboring gene protein tyrosine phosphatase non-receptor type 6

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables rRNA (pseudouridine) methyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables rRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in rRNA base methylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleolus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of small-subunit processome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ribosomal RNA small subunit methyltransferase NEP1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034190915.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference mCavPor4.1

    Genomic

    1. NW_026947510.1 Reference mCavPor4.1

      Range
      377149..384227 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_063237602.1 → XP_063093672.1  ribosomal RNA small subunit methyltransferase NEP1 isoform X2

    2. XM_003463236.5 → XP_003463284.1  ribosomal RNA small subunit methyltransferase NEP1 isoform X1

      UniProtKB/TrEMBL
      H0VXX1
      Related
      ENSCPOP00000015552.1
      Conserved Domains (1) summary
      pfam03587
      Location:45 → 237
      EMG1; EMG1/NEP1 methyltransferase
    Nucleotide Protein
    Heading Accession and Version

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