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    Sgpl1 sphingosine-1-phosphate lyase 1 [ Cavia porcellus (domestic guinea pig) ]

    Gene ID: 100722554, updated on 10-Oct-2024

    Summary

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    Gene symbol
    Sgpl1
    Gene description
    sphingosine-1-phosphate lyase 1
    See related
    Ensembl:ENSCPOG00000012699
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Cavia porcellus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Hystricomorpha; Caviidae; Cavia
    Orthologs
    human mouse all
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    Genomic context

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    See Sgpl1 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    16
    Annotation release Status Assembly Chr Location
    RS_2024_02 current mCavPor4.1 (GCF_034190915.1) Unplaced Scaffold NW_026947511.1 (29051860..29093546)
    103 previous assembly Cavpor3.0 (GCF_000151735.1) Unplaced Scaffold NT_176404.1 (20078452..20119860)

    NW_026947511.1Genomic Context describing neighboring genes Neighboring gene thymus, brain and testes associated Neighboring gene uncharacterized LOC134473644 Neighboring gene pterin-4 alpha-carbinolamine dehydratase 1 Neighboring gene uncharacterized LOC134473813

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables pyridoxal phosphate binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables sphinganine-1-phosphate aldolase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in carboxylic acid metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in sphingolipid catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in endoplasmic reticulum IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    sphingosine-1-phosphate lyase 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034190915.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference mCavPor4.1

    Genomic

    1. NW_026947511.1 Reference mCavPor4.1

      Range
      29051860..29093546
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_063238622.1 → XP_063094692.1  sphingosine-1-phosphate lyase 1

      UniProtKB/TrEMBL
      A0A286X9Q2

    2. XM_063238624.1 → XP_063094694.1  sphingosine-1-phosphate lyase 1

      UniProtKB/TrEMBL
      A0A286X9Q2

    3. XM_063238621.1 → XP_063094691.1  sphingosine-1-phosphate lyase 1

      UniProtKB/TrEMBL
      A0A286X9Q2

    4. XM_063238625.1 → XP_063094695.1  sphingosine-1-phosphate lyase 1

      UniProtKB/TrEMBL
      A0A286X9Q2

    5. XM_003473593.5 → XP_003473641.2  sphingosine-1-phosphate lyase 1

      UniProtKB/TrEMBL
      A0A286X9Q2, H0VM09
      Related
      ENSCPOP00000022133.1
      Conserved Domains (1) summary
      cd06450
      Location:146 → 507
      DOPA_deC_like; DOPA decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and ...
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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    Research Materials