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    Idi1 isopentenyl-diphosphate delta isomerase 1 [ Cavia porcellus (domestic guinea pig) ]

    Gene ID: 100722181, updated on 8-Mar-2024

    Summary

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    Gene symbol
    Idi1
    Gene description
    isopentenyl-diphosphate delta isomerase 1
    See related
    Ensembl:ENSCPOG00000037013
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Cavia porcellus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Hystricomorpha; Caviidae; Cavia
    Orthologs
    human mouse all
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    Genomic context

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    See Idi1 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_02 current mCavPor4.1 (GCF_034190915.1) Unplaced Scaffold NW_026947496.1 (39622617..39627990, complement)
    103 previous assembly Cavpor3.0 (GCF_000151735.1) Unplaced Scaffold NT_176403.1 (9228976..9234582, complement)

    NW_026947496.1Genomic Context describing neighboring genes Neighboring gene GTP binding protein 4 Neighboring gene ATP synthase F(0) complex subunit C2, mitochondrial-like Neighboring gene WD repeat domain 37 Neighboring gene adenosine deaminase RNA specific B2 (inactive)

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables isopentenyl-diphosphate delta-isomerase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in isopentenyl diphosphate biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in isoprenoid biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    isopentenyl-diphosphate Delta-isomerase 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034190915.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference mCavPor4.1

    Genomic

    1. NW_026947496.1 Reference mCavPor4.1

      Range
      39622617..39627990 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_003473402.5 → XP_003473450.1  isopentenyl-diphosphate Delta-isomerase 1 isoform X1

      Conserved Domains (2) summary
      COG1443
      Location:117 → 320
      Idi; Isopentenyldiphosphate isomerase [Lipid transport and metabolism]
      cl00447
      Location:119 → 325
      Nudix_Hydrolase; Nudix hydrolase is a superfamily of enzymes found in all three kingdoms of life, and it catalyzes the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+ ...

    2. XM_013156500.3 → XP_013011954.1  isopentenyl-diphosphate Delta-isomerase 1 isoform X2

      See identical proteins and their annotated locations for XP_013011954.1

      UniProtKB/TrEMBL
      A0A286XEG6
      Conserved Domains (2) summary
      COG1443
      Location:19 → 222
      Idi; Isopentenyldiphosphate isomerase [Lipid transport and metabolism]
      cl00447
      Location:21 → 227
      Nudix_Hydrolase; Nudix hydrolase is a superfamily of enzymes found in all three kingdoms of life, and it catalyzes the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+ ...

    3. XM_013156501.3 → XP_013011955.1  isopentenyl-diphosphate Delta-isomerase 1 isoform X2

      See identical proteins and their annotated locations for XP_013011955.1

      UniProtKB/TrEMBL
      A0A286XEG6
      Related
      ENSCPOP00000023821.1
      Conserved Domains (2) summary
      COG1443
      Location:19 → 222
      Idi; Isopentenyldiphosphate isomerase [Lipid transport and metabolism]
      cl00447
      Location:21 → 227
      Nudix_Hydrolase; Nudix hydrolase is a superfamily of enzymes found in all three kingdoms of life, and it catalyzes the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+ ...
    Nucleotide Protein
    Heading Accession and Version

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