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    Usp1 ubiquitin specific peptidase 1 [ Cavia porcellus (domestic guinea pig) ]

    Gene ID: 100722039, updated on 3-Apr-2024

    Summary

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    Gene symbol
    Usp1
    Gene description
    ubiquitin specific peptidase 1
    See related
    Ensembl:ENSCPOG00000010416
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Cavia porcellus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Hystricomorpha; Caviidae; Cavia
    Orthologs
    human mouse all
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    Genomic context

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    See Usp1 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_02 current mCavPor4.1 (GCF_034190915.1) Unplaced Scaffold NW_026947484.1 (164968026..164980098, complement)
    103 previous assembly Cavpor3.0 (GCF_000151735.1) Unplaced Scaffold NT_176417.1 (69188077..69197991, complement)

    NW_026947484.1Genomic Context describing neighboring genes Neighboring gene dedicator of cytokinesis 7 Neighboring gene dual specificity protein kinase TTK-like Neighboring gene angiopoietin like 3 Neighboring gene uncharacterized LOC134478381 Neighboring gene KN motif and ankyrin repeat domains 4

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables cysteine-type deubiquitinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables cysteine-type endopeptidase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein deubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of DNA repair IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ubiquitin carboxyl-terminal hydrolase 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034190915.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference mCavPor4.1

    Genomic

    1. NW_026947484.1 Reference mCavPor4.1

      Range
      164968026..164980098 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_063259652.1 → XP_063115722.1  ubiquitin carboxyl-terminal hydrolase 1 isoform X1

    2. XM_063259657.1 → XP_063115727.1  ubiquitin carboxyl-terminal hydrolase 1 isoform X2

      UniProtKB/TrEMBL
      H0VXM9

    3. XM_063259655.1 → XP_063115725.1  ubiquitin carboxyl-terminal hydrolase 1 isoform X2

      UniProtKB/TrEMBL
      H0VXM9
    Nucleotide Protein
    Heading Accession and Version

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