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    Ciart circadian associated repressor of transcription [ Cavia porcellus (domestic guinea pig) ]

    Gene ID: 100720834, updated on 8-Mar-2024

    Summary

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    Gene symbol
    Ciart
    Gene description
    circadian associated repressor of transcription
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Cavia porcellus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Hystricomorpha; Caviidae; Cavia
    Orthologs
    human mouse all
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    Genomic context

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    See Ciart in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_02 current mCavPor4.1 (GCF_034190915.1) Unplaced Scaffold NW_026947484.1 (107258715..107264274)
    103 previous assembly Cavpor3.0 (GCF_000151735.1) Unplaced Scaffold NT_176417.1 (11376956..11382482)

    NW_026947484.1Genomic Context describing neighboring genes Neighboring gene carbonic anhydrase 14 Neighboring gene ATP synthase F(0) complex subunit B1, mitochondrial-like Neighboring gene aph-1 homolog A, gamma-secretase subunit Neighboring gene chromosome unknown C1orf54 homolog Neighboring gene mitochondrial ribosomal protein S21 Neighboring gene uncharacterized LOC134476863 Neighboring gene pre-mRNA processing factor 3

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in circadian regulation of gene expression IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in negative regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    circadian-associated transcriptional repressor

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034190915.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference mCavPor4.1

    Genomic

    1. NW_026947484.1 Reference mCavPor4.1

      Range
      107258715..107264274
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_003478883.5 → XP_003478931.1  circadian-associated transcriptional repressor isoform X1

      See identical proteins and their annotated locations for XP_003478931.1

      Conserved Domains (1) summary
      pfam15673
      Location:92 → 365
      DUF4664; Domain of unknown function (DUF4664)

    2. XM_063252728.1 → XP_063108798.1  circadian-associated transcriptional repressor isoform X2

    3. XM_013143182.3 → XP_012998636.1  circadian-associated transcriptional repressor isoform X1

      See identical proteins and their annotated locations for XP_012998636.1

      Conserved Domains (1) summary
      pfam15673
      Location:92 → 365
      DUF4664; Domain of unknown function (DUF4664)

    4. XM_063252723.1 → XP_063108793.1  circadian-associated transcriptional repressor isoform X1

    Nucleotide Protein
    Heading Accession and Version

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    Research Materials