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    Pde4b phosphodiesterase 4B [ Cavia porcellus (domestic guinea pig) ]

    Gene ID: 100720296, updated on 10-Oct-2024

    Summary

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    Gene symbol
    Pde4b
    Gene description
    phosphodiesterase 4B
    See related
    Ensembl:ENSCPOG00000011698
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Cavia porcellus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Hystricomorpha; Caviidae; Cavia
    Orthologs
    human mouse all
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    Genomic context

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    See Pde4b in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    22
    Annotation release Status Assembly Chr Location
    RS_2024_02 current mCavPor4.1 (GCF_034190915.1) Unplaced Scaffold NW_026947484.1 (162374299..162900358, complement)
    103 previous assembly Cavpor3.0 (GCF_000151735.1) Unplaced Scaffold NT_176417.1 (66597900..66637456, complement)

    NW_026947484.1Genomic Context describing neighboring genes Neighboring gene SH3GL interacting endocytic adaptor 1 Neighboring gene uncharacterized LOC134478270 Neighboring gene uncharacterized LOC134478279 Neighboring gene uncharacterized LOC134478276 Neighboring gene uncharacterized LOC134478282 Neighboring gene uncharacterized LOC134478277 Neighboring gene uncharacterized LOC111754252 Neighboring gene 5S ribosomal RNA Neighboring gene small nucleolar RNA SNORA1 Neighboring gene leptin receptor Neighboring gene leptin receptor overlapping transcript

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables 3',5'-cyclic-AMP phosphodiesterase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables transmembrane transporter binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in signal transduction IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in perinuclear region of cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    3',5'-cyclic-AMP phosphodiesterase 4B

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034190915.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference mCavPor4.1

    Genomic

    1. NW_026947484.1 Reference mCavPor4.1

      Range
      162374299..162900358 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_063258980.1 → XP_063115050.1  3',5'-cyclic-AMP phosphodiesterase 4B isoform X1

    2. XM_063259006.1 → XP_063115076.1  3',5'-cyclic-AMP phosphodiesterase 4B isoform X3

    3. XM_063258986.1 → XP_063115056.1  3',5'-cyclic-AMP phosphodiesterase 4B isoform X1

    4. XM_063258995.1 → XP_063115065.1  3',5'-cyclic-AMP phosphodiesterase 4B isoform X2

    5. XM_063259012.1 → XP_063115082.1  3',5'-cyclic-AMP phosphodiesterase 4B isoform X4

      UniProtKB/TrEMBL
      A0A286X8Z8

    6. XM_063259016.1 → XP_063115086.1  3',5'-cyclic-AMP phosphodiesterase 4B isoform X5

    7. XM_003478828.5 → XP_003478876.1  3',5'-cyclic-AMP phosphodiesterase 4B isoform X6

      UniProtKB/TrEMBL
      A0A286XFK6, A0A286XGF4
      Related
      ENSCPOP00000024253.1
      Conserved Domains (1) summary
      pfam00233
      Location:172 → 413
      PDEase_I; 3'5'-cyclic nucleotide phosphodiesterase
    Nucleotide Protein
    Heading Accession and Version

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