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    Gata6 GATA binding protein 6 [ Cavia porcellus (domestic guinea pig) ]

    Gene ID: 100720264, updated on 8-Mar-2024

    Summary

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    Gene symbol
    Gata6
    Gene description
    GATA binding protein 6
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Cavia porcellus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Hystricomorpha; Caviidae; Cavia
    Orthologs
    human mouse all
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    Genomic context

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    See Gata6 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_02 current mCavPor4.1 (GCF_034190915.1) Unplaced Scaffold NW_026947503.1 (58274079..58301724, complement)
    103 previous assembly Cavpor3.0 (GCF_000151735.1) Unplaced Scaffold NT_176405.1 (40386053..40414753, complement)

    NW_026947503.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC134471812 Neighboring gene uncharacterized LOC134471811 Neighboring gene U6 spliceosomal RNA Neighboring gene uncharacterized LOC134471813 Neighboring gene uncharacterized LOC134471855

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cell fate commitment IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in epithelial cell differentiation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in negative regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    transcription factor GATA-6

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034190915.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference mCavPor4.1

    Genomic

    1. NW_026947503.1 Reference mCavPor4.1

      Range
      58274079..58301724 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_063231855.1 → XP_063087925.1  transcription factor GATA-6

    2. XM_063231853.1 → XP_063087923.1  transcription factor GATA-6

    3. XM_063231852.1 → XP_063087922.1  transcription factor GATA-6

    4. XM_063231851.1 → XP_063087921.1  transcription factor GATA-6

    5. XM_063231854.1 → XP_063087924.1  transcription factor GATA-6

    Nucleotide Protein
    Heading Accession and Version

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    Research Materials