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    Hoxa3 homeobox A3 [ Cavia porcellus (domestic guinea pig) ]

    Gene ID: 100719597, updated on 3-Apr-2024

    Summary

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    Gene symbol
    Hoxa3
    Gene description
    homeobox A3
    See related
    Ensembl:ENSCPOG00000030159
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Cavia porcellus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Hystricomorpha; Caviidae; Cavia
    Orthologs
    human mouse all
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    Genomic context

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    See Hoxa3 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_02 current mCavPor4.1 (GCF_034190915.1) Unplaced Scaffold NW_026947485.1 (29437193..29454823, complement)
    103 previous assembly Cavpor3.0 (GCF_000151735.1) Unplaced Scaffold NT_176375.1 (3845782..3865068, complement)

    NW_026947485.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC106027239 Neighboring gene homeobox A2 Neighboring gene uncharacterized LOC134473925 Neighboring gene homeobox A4 Neighboring gene homeobox A5

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in anterior/posterior pattern specification IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in embryonic skeletal system morphogenesis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    homeobox protein Hox-A3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034190915.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference mCavPor4.1

    Genomic

    1. NW_026947485.1 Reference mCavPor4.1

      Range
      29437193..29454823 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_013150466.3 → XP_013005920.1  homeobox protein Hox-A3

      See identical proteins and their annotated locations for XP_013005920.1

      UniProtKB/TrEMBL
      A0A286Y3Z7
      Conserved Domains (3) summary
      COG5576
      Location:181 → 308
      COG5576; Homeodomain-containing transcription factor [Transcription]
      pfam00046
      Location:195 → 247
      Homeobox; Homeobox domain
      pfam13293
      Location:377 → 442
      DUF4074; Domain of unknown function (DUF4074)

    2. XM_063239723.1 → XP_063095793.1  homeobox protein Hox-A3

      UniProtKB/TrEMBL
      A0A286Y3Z7

    3. XM_013150469.2 → XP_013005923.1  homeobox protein Hox-A3

      See identical proteins and their annotated locations for XP_013005923.1

      UniProtKB/TrEMBL
      A0A286Y3Z7
      Related
      ENSCPOP00000032282.1
      Conserved Domains (3) summary
      COG5576
      Location:181 → 308
      COG5576; Homeodomain-containing transcription factor [Transcription]
      pfam00046
      Location:195 → 247
      Homeobox; Homeobox domain
      pfam13293
      Location:377 → 442
      DUF4074; Domain of unknown function (DUF4074)
    Nucleotide Protein
    Heading Accession and Version

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