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    Clrn1 clarin 1 [ Cavia porcellus (domestic guinea pig) ]

    Gene ID: 100719258, updated on 8-Mar-2024

    Summary

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    Gene symbol
    Clrn1
    Gene description
    clarin 1
    See related
    Ensembl:ENSCPOG00000001775
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Cavia porcellus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Hystricomorpha; Caviidae; Cavia
    Orthologs
    human mouse all
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    Genomic context

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    See Clrn1 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_02 current mCavPor4.1 (GCF_034190915.1) Unplaced Scaffold NW_026947488.1 (76430591..76473782, complement)
    103 previous assembly Cavpor3.0 (GCF_000151735.1) Unplaced Scaffold NT_176411.1 (48245075..48283814, complement)

    NW_026947488.1Genomic Context describing neighboring genes Neighboring gene siah E3 ubiquitin protein ligase 2 Neighboring gene MINDY family member 4B Neighboring gene uncharacterized LOC134475897 Neighboring gene mediator complex subunit 12L Neighboring gene G protein-coupled receptor 171

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in equilibrioception IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in sensory perception of sound IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    clarin-1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034190915.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference mCavPor4.1

    Genomic

    1. NW_026947488.1 Reference mCavPor4.1

      Range
      76430591..76473782 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_003476285.4 → XP_003476333.1  clarin-1

      UniProtKB/TrEMBL
      A0A286XHY8
      Related
      ENSCPOP00000025029.1
    Nucleotide Protein
    Heading Accession and Version

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